Wall clock time and date at job start Sun Mar 29 2020 21:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99979 * 2 1 4 4 C 1.46899 * 111.00065 * 123.95226 * 2 1 3 5 5 H 1.08998 * 115.49645 * 325.38517 * 4 2 1 6 6 C 1.53001 * 117.44327 * 180.02562 * 4 2 1 7 7 H 1.09004 * 120.26464 * 3.82663 * 6 4 2 8 8 C 1.54394 * 118.12362 * 160.81310 * 6 4 2 9 9 N 1.48143 * 104.61672 * 87.18956 * 8 6 4 10 10 C 1.36942 * 127.83380 * 140.41747 * 9 8 6 11 11 H 1.07996 * 120.00159 * 344.45965 * 10 9 8 12 12 C 1.38812 * 119.99842 * 164.45782 * 10 9 8 13 13 N 1.31621 * 119.99722 * 350.60765 * 12 10 9 14 14 Si 1.86797 * 120.00136 * 170.60799 * 12 10 9 15 15 H 1.48501 * 109.46972 * 60.00030 * 14 12 10 16 16 H 1.48503 * 109.47012 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47071 * 299.99984 * 14 12 10 18 18 C 1.48144 * 104.32668 * 320.67508 * 9 8 6 19 19 C 1.52999 * 117.44252 * 110.76100 * 4 2 1 20 20 H 1.09001 * 119.53994 * 355.88779 * 19 4 2 21 21 H 1.08991 * 109.47197 * 296.04297 * 1 2 3 22 22 H 1.08999 * 109.46962 * 56.04971 * 1 2 3 23 23 H 1.09000 * 109.46750 * 176.04537 * 1 2 3 24 24 H 1.08995 * 109.47397 * 183.95030 * 3 2 1 25 25 H 1.08999 * 109.47152 * 303.95712 * 3 2 1 26 26 H 1.09000 * 109.46979 * 63.95388 * 3 2 1 27 27 H 1.09007 * 110.40266 * 328.40267 * 8 6 4 28 28 H 1.09000 * 110.40678 * 205.97926 * 8 6 4 29 29 H 0.97006 * 119.99968 * 180.02562 * 13 12 10 30 30 H 1.08998 * 110.40914 * 158.10725 * 18 9 8 31 31 H 1.08996 * 110.40861 * 280.54393 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.4077 -0.7091 2.0538 6 6 3.5158 -0.8613 1.2803 7 1 4.1671 -0.3220 0.5925 8 6 4.0945 -1.2494 2.6581 9 7 4.1172 -2.7307 2.6502 10 6 5.0861 -3.5585 3.1514 11 1 6.0629 -3.1643 3.3898 12 6 4.8127 -4.9044 3.3531 13 7 3.5791 -5.3494 3.2407 14 14 6.1955 -6.0841 3.7841 15 1 6.8356 -5.6539 5.0532 16 1 5.6451 -7.4538 3.9461 17 1 7.2050 -6.0824 2.6951 18 6 2.8572 -3.1131 1.9714 19 6 2.6975 -2.0904 0.8314 20 1 2.7281 -2.4579 -0.1943 21 1 -0.3633 0.4512 0.9232 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9163 -0.8524 26 1 1.7043 1.8723 0.9233 27 1 3.4503 -0.8834 3.4577 28 1 5.1040 -0.8543 2.7713 29 1 3.3879 -6.2899 3.3820 30 1 2.9345 -4.1223 1.5670 31 1 2.0169 -3.0426 2.6620 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306651062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:47 Heat of formation + Delta-G solvation = 47.776248 kcal Electronic energy + Delta-G solvation = -12597.909889 eV Core-core repulsion = 10494.517794 eV Total energy + Delta-G solvation = -2103.392095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59925 -37.33616 -34.84637 -32.24583 -29.08022 -28.26503 -27.76641 -24.97562 -22.64211 -21.20670 -20.75673 -18.86111 -17.26927 -16.67347 -16.05566 -15.51071 -15.49691 -14.65848 -14.56407 -13.84526 -13.54895 -13.20828 -13.07987 -12.89608 -12.68912 -12.51487 -12.40830 -12.05831 -11.93175 -11.74985 -10.95808 -10.66747 -10.63846 -9.27965 -8.92600 -7.92124 -5.29204 1.46247 1.50393 1.56870 2.47031 2.69548 2.80965 3.30589 3.66652 3.90480 4.14510 4.20199 4.27064 4.41100 4.51511 4.56175 4.69337 4.75704 4.87599 4.95246 4.99423 5.02986 5.05812 5.33917 5.43870 5.50339 5.63994 6.09495 6.14028 6.16853 6.99591 7.66816 8.45959 9.21960 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.082925 B = 0.008374 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.572007 B = 3342.686028 C = 3553.648667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.533 5.533 3 C 0.027 3.973 4 C 0.059 3.941 5 H 0.076 0.924 6 C -0.157 4.157 7 H 0.124 0.876 8 C 0.150 3.850 9 N -0.619 5.619 10 C -0.246 4.246 11 H 0.082 0.918 12 C -0.063 4.063 13 N -0.948 5.948 14 Si 0.984 3.016 15 H -0.273 1.273 16 H -0.293 1.293 17 H -0.277 1.277 18 C 0.192 3.808 19 C -0.168 4.168 20 H 0.107 0.893 21 H 0.029 0.971 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.251 0.749 30 H 0.053 0.947 31 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 11.242 -5.760 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.257 5.257 3 C -0.121 4.121 4 C -0.051 4.051 5 H 0.094 0.906 6 C -0.177 4.177 7 H 0.142 0.858 8 C 0.025 3.975 9 N -0.344 5.344 10 C -0.375 4.375 11 H 0.100 0.900 12 C -0.257 4.257 13 N -0.596 5.596 14 Si 0.811 3.189 15 H -0.199 1.199 16 H -0.219 1.219 17 H -0.202 1.202 18 C 0.066 3.934 19 C -0.189 4.189 20 H 0.125 0.875 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -3.399 10.789 -6.101 12.852 hybrid contribution 0.177 -0.581 1.082 1.241 sum -3.222 10.208 -5.019 11.823 Atomic orbital electron populations 1.22423 0.85688 1.02523 1.01363 1.61691 1.09174 1.14594 1.40193 1.22411 1.01141 0.87327 1.01172 1.22387 0.92851 0.96886 0.92961 0.90622 1.23847 0.92259 1.02456 0.99111 0.85806 1.21278 0.98542 0.84405 0.93289 1.45509 1.21238 1.00948 1.66677 1.19385 0.91654 0.90388 1.36025 0.89987 1.25796 0.98886 0.99386 1.01590 1.70109 1.19163 1.14294 1.56004 0.85091 0.78064 0.77393 0.78389 1.19871 1.21853 1.20248 1.20670 0.86745 0.96009 0.89956 1.23915 1.05493 0.89842 0.99621 0.87535 0.95201 0.89146 0.91947 0.91411 0.89486 0.95274 0.96007 0.92036 0.94050 0.92866 0.98441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.57 127.69 1.22 1.85 16 2 N -0.53 -14.73 5.16 -923.31 -4.77 -19.50 16 3 C 0.03 0.59 9.39 127.69 1.20 1.78 16 4 C 0.06 1.98 4.86 44.92 0.22 2.20 16 5 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 6 C -0.16 -5.75 6.34 -9.87 -0.06 -5.81 16 7 H 0.12 4.08 7.31 -2.39 -0.02 4.06 16 8 C 0.15 6.49 7.04 86.54 0.61 7.10 16 9 N -0.62 -33.37 3.38 -688.97 -2.33 -35.70 16 10 C -0.25 -14.18 10.35 84.03 0.87 -13.31 16 11 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 12 C -0.06 -3.65 5.39 84.86 0.46 -3.19 16 13 N -0.95 -58.27 10.89 21.65 0.24 -58.04 16 14 Si 0.98 46.10 29.56 68.60 2.03 48.13 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 C 0.19 9.95 5.67 86.39 0.49 10.44 16 19 C -0.17 -6.91 7.04 -10.01 -0.07 -6.98 16 20 H 0.11 4.31 8.14 -2.39 -0.02 4.30 16 21 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.51 6.92 -2.39 -0.02 1.49 16 25 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 26 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 30 H 0.05 3.10 6.55 -2.39 -0.02 3.08 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -65.38 254.23 1.18 -64.20 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.08 Total: 6.82 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.93 Total: -5.91 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -6.86 Total: -113.24 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -65.38 1.18 -64.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306651062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.974 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds