Wall clock time and date at job start Sun Mar 29 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28687 * 126.01783 * 2 1 4 4 N 1.28466 * 110.90466 * 179.72257 * 3 2 1 5 5 C 1.33316 * 109.52125 * 0.46590 * 4 3 2 6 6 C 1.37119 * 126.01982 * 180.02562 * 2 1 3 7 7 C 1.47016 * 127.28658 * 0.02686 * 6 2 1 8 8 O 1.21578 * 119.99907 * 179.97438 * 7 6 2 9 9 O 1.34810 * 119.99819 * 359.97438 * 7 6 2 10 10 C 1.34847 * 116.99936 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00065 * 359.97438 * 10 9 7 12 12 C 1.38815 * 119.99749 * 180.02562 * 10 9 7 13 13 N 1.31410 * 120.00408 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99678 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47236 * 59.99670 * 14 12 10 16 16 H 1.48505 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47052 * 299.99808 * 14 12 10 18 18 H 1.09005 * 109.47114 * 269.99233 * 1 2 3 19 19 H 1.09005 * 109.47530 * 29.99442 * 1 2 3 20 20 H 1.09006 * 109.47584 * 149.99624 * 1 2 3 21 21 H 1.08002 * 126.91412 * 179.82561 * 5 4 3 22 22 H 0.96995 * 120.00361 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2217 1.0409 0.0000 4 7 3.4619 0.7059 0.0058 5 6 3.5644 -0.6233 -0.0002 6 6 2.2713 -1.1090 -0.0005 7 6 1.8490 -2.5172 -0.0017 8 8 2.6829 -3.4019 -0.0025 9 8 0.5371 -2.8275 -0.0019 10 6 0.2178 -4.1376 -0.0024 11 1 0.9987 -4.8837 -0.0031 12 6 -1.1145 -4.5273 -0.0032 13 7 -2.0647 -3.6195 -0.0029 14 14 -1.5567 -6.3422 -0.0047 15 1 -0.9942 -6.9897 1.2074 16 1 -3.0342 -6.4916 -0.0060 17 1 -0.9934 -6.9879 -1.2175 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3634 -0.8900 -0.5139 21 1 4.4752 -1.2036 -0.0003 22 1 -2.9956 -3.8918 -0.0030 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306718028.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:06 Heat of formation + Delta-G solvation = -2.564328 kcal Electronic energy + Delta-G solvation = -12183.849199 eV Core-core repulsion = 9741.182073 eV Total energy + Delta-G solvation = -2442.667126 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.30256 -40.97638 -37.45539 -35.75879 -34.35977 -32.47074 -29.03729 -27.88568 -25.23935 -23.38364 -21.96340 -20.03394 -19.20663 -17.91827 -17.76626 -16.90837 -16.42780 -16.28375 -15.29855 -14.89303 -14.24802 -13.86203 -13.58791 -13.29537 -13.20070 -12.48765 -12.38593 -12.17533 -12.05634 -11.42738 -11.25415 -10.76120 -10.58396 -8.62544 -6.37785 -0.24905 1.12949 1.14480 1.37227 1.43578 1.51087 1.90992 1.97772 2.46512 2.94814 3.24707 3.70618 3.91702 4.24022 4.40376 4.56436 4.80527 4.94828 5.09821 5.34589 5.71578 6.41837 6.82530 7.18488 7.53073 8.56099 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.065551 B = 0.010440 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.048437 B = 2681.305346 C = 3093.209319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.253 5.253 3 N -0.071 5.071 4 N -0.291 5.291 5 C 0.027 3.973 6 C -0.050 4.050 7 C 0.468 3.532 8 O -0.556 6.556 9 O -0.218 6.218 10 C -0.419 4.419 11 H 0.088 0.912 12 C 0.009 3.991 13 N -0.884 5.884 14 Si 1.015 2.985 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.263 1.263 18 H 0.106 0.894 19 H 0.134 0.866 20 H 0.100 0.900 21 H 0.225 0.775 22 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 3.159 -0.056 3.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.053 5.053 3 N -0.053 5.053 4 N -0.153 5.153 5 C -0.133 4.133 6 C -0.182 4.182 7 C 0.315 3.685 8 O -0.452 6.452 9 O -0.125 6.125 10 C -0.495 4.495 11 H 0.105 0.895 12 C -0.194 4.194 13 N -0.519 5.519 14 Si 0.834 3.166 15 H -0.188 1.188 16 H -0.184 1.184 17 H -0.188 1.188 18 H 0.124 0.876 19 H 0.152 0.848 20 H 0.119 0.881 21 H 0.241 0.759 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.290 4.495 -0.053 4.504 hybrid contribution -0.330 -1.891 0.024 1.920 sum -0.040 2.603 -0.029 2.604 Atomic orbital electron populations 1.22769 0.69405 1.07450 1.06798 1.48039 1.10890 1.03255 1.43099 1.78021 0.96958 1.11868 1.18443 1.74844 1.09246 1.12674 1.18556 1.24400 0.96706 0.90849 1.01383 1.21708 0.92554 0.87019 1.16944 1.19608 0.82805 0.86727 0.79367 1.90680 1.53746 1.48602 1.52210 1.83890 1.22996 1.30001 1.75595 1.21500 0.93631 0.79333 1.55023 0.89455 1.26418 0.93267 1.05478 0.94260 1.69956 1.01176 1.36061 1.44741 0.84706 0.78175 0.73978 0.79758 1.18766 1.18374 1.18761 0.87570 0.84810 0.88130 0.75860 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.29 10.91 127.77 1.39 3.69 14 2 N -0.25 -9.20 3.79 -355.98 -1.35 -10.55 14 3 N -0.07 -2.57 13.12 37.02 0.49 -2.08 14 4 N -0.29 -10.56 12.34 -56.79 -0.70 -11.27 14 5 C 0.03 0.98 11.93 84.44 1.01 1.99 14 6 C -0.05 -2.04 7.02 40.59 0.28 -1.76 14 7 C 0.47 22.89 7.88 70.12 0.55 23.45 14 8 O -0.56 -29.30 16.18 19.58 0.32 -28.99 14 9 O -0.22 -11.57 7.38 10.61 0.08 -11.49 14 10 C -0.42 -23.21 9.65 67.96 0.66 -22.55 14 11 H 0.09 4.94 6.86 -2.91 -0.02 4.92 14 12 C 0.01 0.45 5.50 84.89 0.47 0.92 14 13 N -0.88 -45.93 13.67 21.63 0.30 -45.64 14 14 Si 1.01 39.55 29.55 68.60 2.03 41.57 14 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 14 17 H -0.26 -10.00 7.11 99.48 0.71 -9.30 14 18 H 0.11 3.01 8.14 -2.38 -0.02 2.99 14 19 H 0.13 3.04 8.14 -2.38 -0.02 3.02 14 20 H 0.10 3.74 6.30 -2.38 -0.02 3.72 14 21 H 0.22 6.59 8.06 -2.91 -0.02 6.57 14 22 H 0.28 13.41 8.31 -92.71 -0.77 12.64 14 Total: -1.00 -62.85 216.07 6.77 -56.08 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.25 Total: 6.64 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.36 Total: 5.73 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.27 Total: -69.54 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: 0.40 Total: -40.48 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -62.85 6.77 -56.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306718028.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.516 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds