Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30107 * 126.81744 * 2 1 4 4 O 1.20881 * 111.83622 * 180.02562 * 3 2 1 5 5 C 1.34233 * 111.69466 * 359.72748 * 4 3 2 6 6 C 1.50706 * 126.85361 * 180.33380 * 5 4 3 7 7 C 1.36198 * 106.29721 * 0.43670 * 5 4 3 8 8 N 1.39951 * 128.09782 * 179.85789 * 7 5 4 9 9 C 1.46501 * 119.99725 * 89.67982 * 8 7 5 10 10 C 1.36771 * 119.99928 * 269.67964 * 8 7 5 11 11 H 1.08005 * 120.00106 * 343.13772 * 10 8 7 12 12 C 1.38744 * 120.00195 * 163.41539 * 10 8 7 13 13 N 1.31651 * 119.99542 * 344.04948 * 12 10 8 14 14 Si 1.86799 * 120.00241 * 164.04608 * 12 10 8 15 15 H 1.48488 * 109.47204 * 60.00092 * 14 12 10 16 16 H 1.48497 * 109.46895 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47063 * 299.99759 * 14 12 10 18 18 H 1.09003 * 109.46911 * 269.97394 * 1 2 3 19 19 H 1.08997 * 109.46975 * 29.97464 * 1 2 3 20 20 H 1.08992 * 109.47199 * 149.97743 * 1 2 3 21 21 H 1.09001 * 109.47086 * 270.12717 * 6 5 4 22 22 H 1.08996 * 109.46954 * 30.11981 * 6 5 4 23 23 H 1.08999 * 109.47046 * 150.12579 * 6 5 4 24 24 H 1.08996 * 109.46897 * 265.19270 * 9 8 7 25 25 H 1.08999 * 109.47457 * 25.19862 * 9 8 7 26 26 H 1.09002 * 109.46616 * 145.20142 * 9 8 7 27 27 H 0.96999 * 119.99565 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0416 0.0000 4 8 3.4544 0.7291 -0.0005 5 6 3.6113 -0.6040 0.0050 6 6 4.9146 -1.3607 0.0132 7 6 2.3577 -1.1365 -0.0007 8 7 1.9935 -2.4877 -0.0009 9 6 1.8034 -3.1953 1.2677 10 6 1.8151 -3.1477 -1.1855 11 1 1.6842 -2.5890 -2.1006 12 6 1.7963 -4.5347 -1.2110 13 7 2.2542 -5.2181 -0.1831 14 14 1.1215 -5.4325 -2.7036 15 1 1.9136 -5.0624 -3.9038 16 1 1.2124 -6.8981 -2.4826 17 1 -0.2986 -5.0508 -2.9106 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8897 -0.5141 21 1 5.2343 -1.5449 -1.0124 22 1 5.6730 -0.7725 0.5300 23 1 4.7792 -2.3119 0.5280 24 1 2.7255 -3.7093 1.5388 25 1 1.5435 -2.4796 2.0476 26 1 0.9995 -3.9237 1.1605 27 1 2.2414 -6.1879 -0.2011 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306756844.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = 77.192346 kcal Electronic energy + Delta-G solvation = -12638.555132 eV Core-core repulsion = 10400.605521 eV Total energy + Delta-G solvation = -2237.949611 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.95704 -36.17871 -33.41707 -32.36972 -30.45205 -27.93491 -26.84912 -25.99041 -23.51357 -20.64677 -19.28525 -17.25173 -16.69719 -16.01056 -15.02239 -13.91763 -13.51279 -13.16099 -12.82120 -12.65600 -12.43679 -12.05370 -11.96901 -11.54512 -11.13702 -10.98145 -10.63713 -10.41348 -10.22878 -10.02570 -9.02771 -8.69528 -8.11279 -7.10834 -5.89184 -3.34236 2.27989 3.10769 3.32737 3.38233 3.40108 3.87953 4.40968 4.94563 5.23798 5.34127 5.50600 5.90010 6.01746 6.07369 6.10594 6.20745 6.38902 6.59219 6.64600 6.73756 6.86896 7.28261 7.57391 7.70940 8.25826 9.07047 9.07471 9.76028 10.14785 11.16530 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.041243 B = 0.012725 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.742254 B = 2199.800848 C = 2412.803119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.007 4.007 3 N -0.385 5.385 4 O 0.079 5.921 5 C -0.082 4.082 6 C -0.051 4.051 7 C 0.102 3.898 8 N -0.526 5.526 9 C 0.167 3.833 10 C -0.260 4.260 11 H 0.072 0.928 12 C 0.008 3.992 13 N -0.905 5.905 14 Si 0.911 3.089 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.282 1.282 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.034 0.966 25 H 0.000 1.000 26 H 0.057 0.943 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 5.084 1.267 5.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 N -0.095 5.095 4 O 0.018 5.982 5 C -0.148 4.148 6 C -0.108 4.108 7 C 0.001 3.999 8 N -0.245 5.245 9 C 0.024 3.976 10 C -0.388 4.388 11 H 0.090 0.910 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.740 3.260 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.209 1.209 18 H 0.087 0.913 19 H 0.081 0.919 20 H 0.103 0.897 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.052 0.948 25 H 0.018 0.982 26 H 0.076 0.924 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.513 6.134 1.308 6.293 hybrid contribution -0.394 -1.367 -0.819 1.642 sum 0.119 4.768 0.489 4.794 Atomic orbital electron populations 1.19971 0.86790 1.02970 1.02250 1.24091 0.98841 0.90978 1.02921 1.73641 0.89699 1.24212 1.21993 1.84666 1.21279 1.22928 1.69330 1.24983 0.99929 0.83371 1.06523 1.20042 0.89135 0.98469 1.03173 1.18124 0.89159 0.89018 1.03608 1.40802 1.77959 1.01497 1.04256 1.20931 1.00869 0.92901 0.82947 1.19095 1.44600 0.88826 0.86229 0.91045 1.24904 0.99858 0.96381 0.97925 1.70122 1.47634 1.06355 1.30762 0.86237 0.79255 0.78540 0.81977 1.20792 1.21414 1.20870 0.91323 0.91945 0.89689 0.90531 0.91690 0.89004 0.94757 0.98175 0.92446 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.48 36.01 0.38 -0.73 15 2 C -0.01 -0.14 7.35 -81.90 -0.60 -0.74 15 3 N -0.39 -8.11 12.05 33.60 0.40 -7.71 15 4 O 0.08 1.60 11.19 16.67 0.19 1.79 15 5 C -0.08 -1.70 7.53 -35.04 -0.26 -1.97 15 6 C -0.05 -0.88 10.45 36.01 0.38 -0.50 15 7 C 0.10 2.34 5.80 -83.46 -0.48 1.85 15 8 N -0.53 -13.22 3.15 -120.29 -0.38 -13.60 15 9 C 0.17 4.04 8.97 59.85 0.54 4.57 15 10 C -0.26 -6.99 9.68 -15.16 -0.15 -7.14 15 11 H 0.07 1.94 7.88 -52.48 -0.41 1.53 15 12 C 0.01 0.21 5.06 -17.44 -0.09 0.13 15 13 N -0.90 -25.00 10.50 55.49 0.58 -24.41 15 14 Si 0.91 21.19 29.58 -169.99 -5.03 16.16 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 19 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 21 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.09 1.74 8.14 -51.93 -0.42 1.31 15 24 H 0.03 0.87 7.51 -51.93 -0.39 0.48 15 25 H 0.00 -0.01 8.01 -51.93 -0.42 -0.42 15 26 H 0.06 1.47 6.95 -51.93 -0.36 1.10 15 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 240.64 15.07 3.63 3.63 Total: -1.00 -28.81 240.64 -4.15 -32.97 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -3.25 Total: -4.29 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.29 Total: -4.53 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.61 Total: -45.72 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.19 Total: 1.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.81 -4.15 -32.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306756844.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.158 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds