Wall clock time and date at job start Sun Mar 29 2020 21:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47289 * 2 1 4 4 C 1.50699 * 109.47108 * 120.00782 * 2 1 3 5 5 H 1.07993 * 120.00148 * 116.25067 * 4 2 1 6 6 C 1.37878 * 119.99732 * 296.24056 * 4 2 1 7 7 N 1.31514 * 120.00040 * 353.39902 * 6 4 2 8 8 Si 1.86801 * 119.99771 * 173.39653 * 6 4 2 9 9 H 1.48504 * 109.46849 * 265.04482 * 8 6 4 10 10 H 1.48494 * 109.47362 * 25.04474 * 8 6 4 11 11 H 1.48499 * 109.46932 * 145.04704 * 8 6 4 12 12 N 1.46901 * 109.46759 * 240.00274 * 2 1 3 13 13 C 1.46903 * 111.00136 * 84.99841 * 12 2 1 14 14 H 1.09001 * 110.66815 * 31.76466 * 13 12 2 15 15 C 1.54888 * 110.75828 * 268.33020 * 13 12 2 16 16 C 1.54264 * 104.19536 * 203.73844 * 15 13 12 17 17 H 1.09001 * 117.75825 * 163.96739 * 16 15 13 18 18 C 1.55468 * 118.30327 * 320.02532 * 16 15 13 19 19 C 1.52999 * 59.84076 * 93.29008 * 18 16 15 20 20 H 1.09004 * 119.29778 * 111.70957 * 19 18 16 21 21 C 1.54265 * 118.19899 * 265.85037 * 19 18 16 22 22 H 1.09007 * 109.46813 * 293.77541 * 1 2 3 23 23 H 1.08996 * 109.47489 * 53.77472 * 1 2 3 24 24 H 1.09000 * 109.47329 * 173.78287 * 1 2 3 25 25 H 0.97000 * 119.99505 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00251 * 321.04977 * 12 2 1 27 27 H 1.08994 * 110.48448 * 322.41623 * 15 13 12 28 28 H 1.09005 * 110.48447 * 85.06278 * 15 13 12 29 29 H 1.09002 * 118.06317 * 346.15621 * 18 16 15 30 30 H 1.09001 * 117.16304 * 200.83125 * 18 16 15 31 31 H 1.08997 * 110.48867 * 283.09978 * 21 19 18 32 32 H 1.09001 * 110.59878 * 160.51529 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6024 -1.6226 1.1323 6 6 1.7644 -0.1961 2.4812 7 7 1.1849 0.9786 2.5988 8 14 2.2244 -1.1678 4.0088 9 1 1.0504 -1.9527 4.4683 10 1 3.3430 -2.0910 3.6902 11 1 2.6452 -0.2322 5.0825 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3470 14 1 2.3077 1.2372 -2.0181 15 6 0.7604 0.1836 -3.1532 16 6 1.1644 0.6556 -4.5652 17 1 0.4699 0.4630 -5.3829 18 6 2.1849 1.8219 -4.6887 19 6 2.6696 0.3709 -4.7099 20 1 3.0827 -0.0401 -5.6312 21 6 3.1278 -0.2642 -3.3808 22 1 -0.3633 0.4143 0.9405 23 1 -0.3634 0.6073 -0.8290 24 1 -0.3634 -1.0216 -0.1113 25 1 0.9960 1.3402 3.4788 26 1 1.4495 -1.4978 -1.4102 27 1 0.3652 -0.8315 -3.1888 28 1 0.0282 0.8641 -2.7184 29 1 2.4008 2.4110 -3.7973 30 1 2.2013 2.3713 -5.6300 31 1 4.1233 0.0894 -3.1123 32 1 3.1165 -1.3518 -3.4515 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306802007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:55 Heat of formation + Delta-G solvation = 18.103709 kcal Electronic energy + Delta-G solvation = -12491.988690 eV Core-core repulsion = 10452.735809 eV Total energy + Delta-G solvation = -2039.252881 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32957 -35.47945 -32.47259 -29.84450 -27.88773 -26.75164 -25.01066 -22.48715 -20.29369 -19.39507 -19.15361 -16.39977 -15.75625 -15.04199 -14.26813 -13.45959 -13.22321 -12.92631 -12.66452 -12.30093 -11.75897 -11.48251 -11.18499 -10.94278 -10.84559 -10.75112 -10.56904 -10.28757 -10.13258 -9.81308 -9.70826 -9.29921 -8.88297 -8.31072 -7.20341 -5.96874 -3.97589 3.34417 3.41176 3.45861 3.86597 4.46949 4.72009 4.94294 5.12115 5.28135 5.35731 5.43156 5.73429 5.83551 5.84380 5.90098 6.12226 6.19483 6.27701 6.38020 6.43296 6.58997 6.66721 6.75578 6.89032 7.10292 7.39613 7.69410 7.92520 8.28310 8.59633 8.67107 9.09666 9.66672 11.11898 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071587 B = 0.008240 C = 0.007933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.036450 B = 3397.255097 C = 3528.557488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.210 3.790 3 H 0.037 0.963 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.675 5.675 13 C 0.084 3.916 14 H 0.077 0.923 15 C -0.123 4.123 16 C -0.168 4.168 17 H 0.102 0.898 18 C -0.160 4.160 19 C -0.164 4.164 20 H 0.102 0.898 21 C -0.085 4.085 22 H 0.074 0.926 23 H 0.013 0.987 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.326 0.674 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -0.396 -11.537 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.303 5.303 13 C -0.028 4.028 14 H 0.095 0.905 15 C -0.162 4.162 16 C -0.187 4.187 17 H 0.120 0.880 18 C -0.197 4.197 19 C -0.183 4.183 20 H 0.120 0.880 21 C -0.124 4.124 22 H 0.093 0.907 23 H 0.032 0.968 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.143 0.857 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.672 -0.211 -11.189 11.211 hybrid contribution -0.888 -0.328 0.574 1.107 sum -0.216 -0.539 -10.615 10.631 Atomic orbital electron populations 1.22464 1.00968 0.98103 1.00885 1.19237 0.89315 0.94634 0.86542 0.94496 1.21174 1.33092 1.09500 0.89748 0.91990 1.24953 0.95645 0.94885 0.99005 1.69955 1.43680 1.16562 1.23429 0.86542 0.78609 0.79873 0.82738 1.20910 1.19843 1.21414 1.60756 1.57698 1.08601 1.03249 1.22568 0.92335 0.97147 0.90721 0.90464 1.22778 0.99649 1.00620 0.93169 1.23473 0.92630 1.03650 0.98920 0.87968 1.23267 1.02918 0.90888 1.02639 1.23176 0.97650 0.97911 0.99548 0.88013 1.21923 0.99086 0.99976 0.91370 0.90686 0.96810 0.95499 0.93130 0.85679 0.91307 0.91608 0.88790 0.88925 0.91651 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 8.82 37.16 0.33 -3.60 16 2 C 0.21 5.32 2.46 -68.86 -0.17 5.15 16 3 H 0.04 1.04 7.43 -51.93 -0.39 0.65 16 4 C -0.50 -13.91 8.79 -34.44 -0.30 -14.22 16 5 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 6 C 0.06 1.57 5.19 -17.82 -0.09 1.48 16 7 N -0.90 -26.07 11.91 55.43 0.66 -25.41 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.68 -14.43 6.14 -98.87 -0.61 -15.03 16 13 C 0.08 1.52 2.72 -65.72 -0.18 1.34 16 14 H 0.08 1.53 6.72 -51.93 -0.35 1.18 16 15 C -0.12 -1.96 5.58 -25.07 -0.14 -2.10 16 16 C -0.17 -2.30 7.16 -88.19 -0.63 -2.94 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.16 -2.07 9.94 -25.42 -0.25 -2.33 16 19 C -0.16 -2.21 6.97 -89.50 -0.62 -2.83 16 20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 21 C -0.09 -1.34 6.45 -25.08 -0.16 -1.50 16 22 H 0.07 1.99 6.52 -51.92 -0.34 1.65 16 23 H 0.01 0.28 6.19 -51.93 -0.32 -0.04 16 24 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 6.60 7.87 -39.29 -0.31 6.29 16 27 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.07 1.11 6.72 -51.93 -0.35 0.76 16 29 H 0.09 1.31 7.27 -51.93 -0.38 0.93 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 254.32 15.07 3.83 3.83 Total: -1.00 -28.36 254.32 -8.27 -36.63 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.91 Total: 4.84 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.23 Total: -21.54 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.05 Total: -40.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.36 -8.27 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306802007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.733 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds