Wall clock time and date at job start Sun Mar 29 2020 22:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47365 * 2 1 4 4 C 1.53008 * 109.47233 * 240.00185 * 2 1 3 5 5 N 1.46502 * 115.54888 * 294.72104 * 4 2 1 6 6 C 1.34776 * 119.99801 * 294.59203 * 5 4 2 7 7 O 1.21690 * 120.00162 * 354.90043 * 6 5 4 8 8 C 1.46377 * 120.00102 * 174.89953 * 6 5 4 9 9 H 1.08000 * 119.99841 * 359.97438 * 8 6 5 10 10 C 1.40040 * 120.00118 * 180.02562 * 8 6 5 11 11 N 1.30678 * 120.00388 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00194 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47160 * 89.99575 * 12 10 8 14 14 H 1.48501 * 109.47223 * 209.99909 * 12 10 8 15 15 H 1.48502 * 109.46687 * 329.99879 * 12 10 8 16 16 C 1.52998 * 117.50116 * 149.05000 * 4 2 1 17 17 C 1.52998 * 117.49788 * 80.38312 * 4 2 1 18 18 H 1.09006 * 109.47216 * 180.72132 * 1 2 3 19 19 H 1.09005 * 109.46858 * 60.72393 * 1 2 3 20 20 H 1.08996 * 109.47310 * 300.72436 * 1 2 3 21 21 H 1.08999 * 109.46993 * 120.00537 * 2 1 3 22 22 H 1.09003 * 109.47106 * 59.99930 * 3 2 1 23 23 H 1.08998 * 109.47719 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47503 * 300.00225 * 3 2 1 25 25 H 0.96997 * 120.00128 * 114.59449 * 5 4 2 26 26 H 0.96996 * 120.00024 * 180.02562 * 11 10 8 27 27 H 1.09001 * 117.49333 * 359.97438 * 16 4 2 28 28 H 1.08997 * 117.50005 * 145.02479 * 16 4 2 29 29 H 1.08999 * 117.50053 * 214.98038 * 17 4 2 30 30 H 1.09002 * 117.49996 * 359.97438 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.7295 -2.1510 -1.3245 6 6 2.2669 -3.0052 -0.4312 7 8 3.0816 -2.6050 0.3794 8 6 1.8707 -4.4143 -0.4359 9 1 1.1474 -4.7694 -1.1550 10 6 2.4287 -5.3017 0.4927 11 7 3.3035 -4.8720 1.3631 12 14 1.9236 -7.1001 0.4862 13 1 2.8253 -7.8643 -0.4129 14 1 2.0191 -7.6461 1.8639 15 1 0.5247 -7.2195 0.0023 16 6 3.3728 -0.2558 -1.8391 17 6 2.0618 0.0668 -2.5606 18 1 -0.3634 -1.0276 0.0129 19 1 -0.3633 0.5026 -0.8965 20 1 -0.3634 0.5250 0.8834 21 1 1.8933 -0.5139 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.1372 -2.4829 -2.0172 26 1 3.6903 -5.4868 2.0060 27 1 3.8861 0.5645 -1.3373 28 1 4.0185 -1.0133 -2.2835 29 1 1.8455 -0.4786 -3.4792 30 1 1.7123 1.0989 -2.5333 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307099482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:08 Heat of formation + Delta-G solvation = -25.955499 kcal Electronic energy + Delta-G solvation = -12858.047692 eV Core-core repulsion = 10653.739687 eV Total energy + Delta-G solvation = -2204.308005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.78654 -36.06059 -32.63255 -32.36610 -31.03745 -26.77476 -26.07982 -22.72209 -21.94643 -20.19296 -17.75729 -17.09549 -15.77319 -15.23049 -14.63161 -13.93764 -13.81552 -12.75510 -12.58394 -12.30747 -12.08607 -11.68128 -11.30401 -11.16688 -11.02567 -10.83455 -10.53631 -10.43616 -10.42026 -10.15992 -9.86716 -9.16286 -8.80491 -7.50771 -7.40760 -6.14931 -4.60822 3.15317 3.22125 3.25429 4.10932 4.36500 4.63844 4.75881 5.20586 5.43535 5.46457 5.62599 5.76991 5.86122 5.98080 6.04234 6.06879 6.21942 6.32723 6.35835 6.51802 6.63909 6.75748 6.82842 7.03490 7.46083 7.96007 8.20147 8.38138 9.05668 9.61003 10.64523 10.84856 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055597 B = 0.009663 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.500853 B = 2897.084561 C = 2933.634814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.146 4.146 4 C 0.141 3.859 5 N -0.737 5.737 6 C 0.558 3.442 7 O -0.571 6.571 8 C -0.547 4.547 9 H 0.066 0.934 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C -0.181 4.181 17 C -0.193 4.193 18 H 0.058 0.942 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.089 0.911 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.380 0.620 26 H 0.267 0.733 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 7.080 -4.646 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.204 4.204 4 C 0.052 3.948 5 N -0.390 5.390 6 C 0.362 3.638 7 O -0.453 6.453 8 C -0.584 4.584 9 H 0.084 0.916 10 C -0.131 4.131 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.190 1.190 16 C -0.220 4.220 17 C -0.230 4.230 18 H 0.077 0.923 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.107 0.893 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.212 0.788 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.468 7.308 -3.860 8.963 hybrid contribution -0.488 -1.118 -0.434 1.294 sum -3.956 6.191 -4.294 8.510 Atomic orbital electron populations 1.21691 0.95513 1.01915 1.00213 1.20760 0.95149 0.94529 0.98377 1.21958 1.01262 0.96253 1.00897 1.20215 0.98550 0.83952 0.92119 1.45668 1.53824 1.03450 1.36108 1.18187 0.80458 0.85714 0.79416 1.90590 1.35734 1.78537 1.40444 1.20884 1.26760 0.92294 1.18436 0.91592 1.25681 0.93483 0.99878 0.94080 1.70022 1.21102 1.35221 1.13351 0.86408 0.79694 0.82922 0.77922 1.19809 1.20487 1.18960 1.23301 0.91537 1.03132 1.03986 1.23272 1.03030 1.00589 0.96116 0.92269 0.93525 0.93527 0.89314 0.93071 0.92394 0.93011 0.78779 0.92192 0.88943 0.89290 0.89413 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.13 37.16 0.34 -1.90 16 2 C -0.07 -1.28 2.98 -90.62 -0.27 -1.55 16 3 C -0.15 -2.20 8.23 37.15 0.31 -1.89 16 4 C 0.14 2.77 1.57 -131.82 -0.21 2.57 16 5 N -0.74 -16.77 5.31 -49.00 -0.26 -17.03 16 6 C 0.56 15.88 7.59 -12.99 -0.10 15.78 16 7 O -0.57 -18.30 14.08 5.20 0.07 -18.23 16 8 C -0.55 -15.54 9.54 -35.63 -0.34 -15.88 16 9 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 10 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 11 N -0.77 -23.15 11.83 55.55 0.66 -22.49 16 12 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 C -0.18 -3.35 9.73 -26.69 -0.26 -3.61 16 17 C -0.19 -3.03 9.79 -26.69 -0.26 -3.29 16 18 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.09 2.05 7.18 -51.93 -0.37 1.68 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 24 H 0.05 0.68 6.39 -51.93 -0.33 0.35 16 25 H 0.38 7.74 8.81 -40.82 -0.36 7.38 16 26 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 27 H 0.09 1.58 6.08 -51.93 -0.32 1.26 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.27 6.45 -51.93 -0.33 0.93 16 LS Contribution 252.31 15.07 3.80 3.80 Total: -1.00 -32.82 252.31 -5.76 -38.59 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.12 Total: 7.45 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.89 Total: -7.39 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.40 Total: -39.53 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.07 Total: -18.23 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.82 -5.76 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307099482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.630 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds