Wall clock time and date at job start Sun Mar 29 2020 21:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47130 * 269.99943 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99693 * 3 2 1 6 6 H 1.48497 * 109.47293 * 149.99844 * 3 2 1 7 7 C 1.38809 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99943 * 162.94777 * 7 2 1 9 9 N 1.36931 * 119.99944 * 343.21787 * 7 2 1 10 10 C 1.46930 * 120.63312 * 331.64944 * 9 7 2 11 11 C 1.53186 * 108.77477 * 233.58632 * 10 9 7 12 12 C 1.53038 * 109.31552 * 305.36309 * 11 10 9 13 13 C 1.53034 * 109.53955 * 61.36468 * 12 11 10 14 14 H 1.09006 * 109.49509 * 58.61934 * 13 12 11 15 15 C 1.52997 * 109.50022 * 178.68638 * 13 12 11 16 16 C 1.53001 * 117.49757 * 248.74925 * 15 13 12 17 17 C 1.53001 * 117.50093 * 180.09283 * 15 13 12 18 18 C 1.46925 * 120.62912 * 151.37018 * 9 7 2 19 19 H 0.97003 * 120.00021 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.58159 * 353.37396 * 10 9 7 21 21 H 1.09002 * 109.58542 * 113.79396 * 10 9 7 22 22 H 1.09000 * 109.50381 * 65.31711 * 11 10 9 23 23 H 1.09009 * 109.49798 * 185.41130 * 11 10 9 24 24 H 1.08995 * 109.46287 * 181.38897 * 12 11 10 25 25 H 1.09004 * 109.45581 * 301.35810 * 12 11 10 26 26 H 1.08996 * 115.54992 * 34.41727 * 15 13 12 27 27 H 1.09005 * 117.50102 * 359.97438 * 16 15 13 28 28 H 1.08996 * 117.49655 * 145.02066 * 16 15 13 29 29 H 1.08999 * 117.50008 * 214.98121 * 17 15 13 30 30 H 1.09003 * 117.49584 * 359.96948 * 17 15 13 31 31 H 1.09003 * 109.58409 * 246.19834 * 18 9 7 32 32 H 1.08998 * 109.58983 * 6.62739 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0546 -1.2226 -0.2748 9 7 1.3693 -2.3629 0.3413 10 6 0.2260 -2.3430 1.2640 11 6 0.4973 -3.3266 2.4066 12 6 0.8102 -4.7063 1.8232 13 6 2.0650 -4.6209 0.9513 14 1 2.9009 -4.2605 1.5511 15 6 2.3958 -6.0072 0.3950 16 6 3.6587 -6.6951 0.9173 17 6 3.6263 -6.1319 -0.5056 18 6 1.8080 -3.6512 -0.2122 19 1 -0.4850 0.8401 -0.0004 20 1 0.1003 -1.3386 1.6684 21 1 -0.6778 -2.6407 0.7323 22 1 1.3478 -2.9780 2.9926 23 1 -0.3829 -3.3931 3.0462 24 1 0.9795 -5.4139 2.6348 25 1 -0.0307 -5.0435 1.2171 26 1 1.5375 -6.6384 0.1647 27 1 4.2542 -6.1598 1.6570 28 1 3.6314 -7.7788 1.0302 29 1 3.5777 -6.8453 -1.3282 30 1 4.2000 -5.2261 -0.7022 31 1 1.0306 -4.0535 -0.8617 32 1 2.7265 -3.5104 -0.7820 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307180618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:39 Heat of formation + Delta-G solvation = 12.969720 kcal Electronic energy + Delta-G solvation = -12697.505621 eV Core-core repulsion = 10658.030113 eV Total energy + Delta-G solvation = -2039.475508 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82311 -37.41992 -34.68372 -32.28035 -31.12335 -27.21333 -24.57349 -23.93172 -22.87328 -21.36027 -20.56227 -18.62187 -16.92089 -16.44245 -15.69851 -15.38841 -15.11178 -14.78088 -14.33081 -13.99226 -13.58518 -13.00058 -12.80261 -12.48252 -12.37678 -12.33376 -12.04405 -11.81044 -11.59886 -11.48658 -11.20603 -10.86477 -10.70628 -10.47354 -8.66393 -7.87939 -5.34362 1.44697 1.46059 1.56386 2.49856 2.99931 3.25915 3.61463 3.88590 4.08918 4.12025 4.24484 4.33634 4.43251 4.63999 4.73857 4.82829 4.84251 4.91024 4.99388 5.11249 5.13109 5.24513 5.34827 5.36088 5.40685 5.51272 5.57092 5.66644 5.78218 6.38453 7.14106 7.86069 8.38447 9.17923 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047752 B = 0.010464 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.217202 B = 2675.323819 C = 3030.856069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.175 3.825 11 C -0.134 4.134 12 C -0.095 4.095 13 C -0.062 4.062 14 H 0.054 0.946 15 C -0.152 4.152 16 C -0.166 4.166 17 C -0.184 4.184 18 C 0.155 3.845 19 H 0.250 0.750 20 H 0.051 0.949 21 H -0.006 1.006 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.008 0.992 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -11.251 3.049 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.081 0.919 9 N -0.337 5.337 10 C 0.049 3.951 11 C -0.173 4.173 12 C -0.132 4.132 13 C -0.083 4.083 14 H 0.072 0.928 15 C -0.170 4.170 16 C -0.203 4.203 17 C -0.221 4.221 18 C 0.029 3.971 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.012 0.988 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.127 0.873 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.400 -11.109 3.039 12.329 hybrid contribution 0.069 1.246 -0.271 1.277 sum 4.469 -9.863 2.768 11.177 Atomic orbital electron populations 1.70197 1.06719 1.25880 1.55361 1.25845 0.96102 1.01607 1.01212 0.85267 0.78066 0.79399 0.77668 1.20990 1.21620 1.19561 1.19500 0.92756 0.86174 1.41154 0.91909 1.44374 1.36117 1.02507 1.50675 1.20614 0.87647 0.97636 0.89202 1.22044 1.00689 0.96460 0.98057 1.21371 0.96890 0.96136 0.98824 1.21143 0.97666 0.92979 0.96465 0.92761 1.22260 0.92935 0.96955 1.04900 1.23050 0.99894 1.00768 0.96620 1.22966 1.01583 1.03033 0.94536 1.21085 0.96563 0.85614 0.93811 0.94064 0.93102 0.98814 0.93359 0.91208 0.90617 0.92767 0.87300 0.89287 0.87060 0.87555 0.90092 0.97386 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 11.20 21.65 0.24 -56.81 16 2 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 46.00 29.59 68.60 2.03 48.03 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.27 -15.28 9.58 84.03 0.81 -14.47 16 8 H 0.06 3.53 7.89 -2.91 -0.02 3.51 16 9 N -0.61 -32.53 2.99 -698.26 -2.08 -34.61 16 10 C 0.17 8.86 5.30 86.36 0.46 9.31 16 11 C -0.13 -5.23 6.08 30.67 0.19 -5.04 16 12 C -0.09 -3.17 5.15 30.62 0.16 -3.01 16 13 C -0.06 -2.18 2.50 -10.57 -0.03 -2.21 16 14 H 0.05 2.02 7.90 -2.38 -0.02 2.00 16 15 C -0.15 -4.16 5.15 -10.79 -0.06 -4.22 16 16 C -0.17 -3.76 10.18 30.62 0.31 -3.44 16 17 C -0.18 -4.62 9.81 30.62 0.30 -4.32 16 18 C 0.15 6.80 5.59 86.51 0.48 7.28 16 19 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 20 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 21 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.11 2.77 8.11 -2.39 -0.02 2.75 16 27 H 0.09 2.06 8.05 -2.38 -0.02 2.04 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.25 7.71 -2.39 -0.02 2.24 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 2.02 7.33 -2.39 -0.02 2.00 16 Total: -1.00 -63.80 255.85 4.29 -59.51 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.06 Total: 6.61 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.04 Total: -22.73 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -1.84 Total: -91.42 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -63.80 4.29 -59.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.476 kcal (2) G-P(sol) polarization free energy of solvation -63.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds