Wall clock time and date at job start Sun Mar 29 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47144 * 269.99730 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00160 * 3 2 1 6 6 H 1.48498 * 109.47099 * 149.99841 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00085 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00055 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47152 * 179.97438 * 9 7 2 11 11 N 1.40090 * 126.03493 * 90.02409 * 10 9 7 12 12 C 1.30836 * 108.20519 * 179.97438 * 11 10 9 13 13 C 1.39870 * 108.20019 * 0.26835 * 12 11 10 14 14 C 1.34942 * 126.03976 * 270.02529 * 10 9 7 15 15 N 1.48024 * 126.12665 * 0.02562 * 14 10 9 16 16 O 1.21796 * 119.99954 * 0.02562 * 15 14 10 17 17 O 1.21801 * 119.99826 * 179.97438 * 15 14 10 18 18 H 0.97000 * 119.99537 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47395 * 60.00177 * 9 7 2 20 20 H 1.08999 * 109.47027 * 300.00219 * 9 7 2 21 21 H 1.08002 * 125.89537 * 179.97438 * 12 11 10 22 22 H 1.07998 * 126.03430 * 179.69749 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 7 4.2754 -3.3530 -1.1300 12 6 4.6907 -4.5269 -0.7284 13 6 4.6871 -4.5366 0.6702 14 6 4.2635 -3.3233 1.0940 15 7 4.1108 -2.8954 2.5028 16 8 3.7129 -1.7730 2.7585 17 8 4.3822 -3.6659 3.4061 18 1 -0.4849 0.8401 -0.0004 19 1 3.8746 -0.6801 0.8912 20 1 3.8752 -0.6805 -0.8888 21 1 4.9812 -5.3482 -1.3668 22 1 4.9737 -5.3654 1.3005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307236176.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:25 Heat of formation + Delta-G solvation = 61.182286 kcal Electronic energy + Delta-G solvation = -12278.858267 eV Core-core repulsion = 9838.955402 eV Total energy + Delta-G solvation = -2439.902865 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.58775 -42.23449 -37.87446 -35.82700 -33.95417 -32.41615 -29.77950 -27.67857 -25.04913 -22.73084 -22.45285 -19.80971 -19.67161 -19.48025 -18.79389 -17.12794 -16.47318 -15.82126 -15.38519 -15.10617 -14.55434 -13.93186 -13.28133 -12.95392 -12.71024 -12.48303 -12.41020 -12.28165 -11.99884 -11.91084 -11.08585 -10.95546 -10.07038 -8.48929 -6.61443 -1.14204 -0.16411 0.66345 1.27336 1.30892 1.39626 1.45112 1.45685 2.21422 2.83679 3.37457 3.70698 4.05025 4.34771 4.51003 4.61107 4.82601 5.07497 5.31019 5.41679 5.97090 6.13264 6.36940 6.50378 7.02329 8.67643 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039188 B = 0.013533 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.336477 B = 2068.517110 C = 2432.315051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.553 4.553 8 H 0.025 0.975 9 C 0.226 3.774 10 N -0.325 5.325 11 N -0.259 5.259 12 C 0.053 3.947 13 C -0.162 4.162 14 C 0.089 3.911 15 N 0.051 4.949 16 O -0.203 6.203 17 O -0.101 6.101 18 H 0.276 0.724 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.259 0.741 22 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 -6.679 0.228 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.591 4.591 8 H 0.043 0.957 9 C 0.107 3.893 10 N -0.111 5.111 11 N -0.087 5.087 12 C -0.129 4.129 13 C -0.195 4.195 14 C -0.121 4.121 15 N 0.570 4.430 16 O -0.404 6.404 17 O -0.329 6.329 18 H 0.085 0.915 19 H 0.090 0.910 20 H 0.084 0.916 21 H 0.274 0.726 22 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.339 -5.745 -1.415 12.790 hybrid contribution -0.356 0.423 1.123 1.252 sum 10.983 -5.323 -0.292 12.208 Atomic orbital electron populations 1.69999 1.08305 1.29173 1.49511 1.25752 0.95722 1.03270 0.92533 0.85723 0.79749 0.77717 0.80004 1.17817 1.19610 1.16688 1.21010 0.89484 0.93844 1.54805 0.95693 1.20211 0.94676 0.73843 1.00618 1.49275 1.46882 1.13757 1.01181 1.77670 1.18661 1.05695 1.06652 1.24901 0.97930 0.96242 0.93863 1.21898 1.05768 0.94883 0.96943 1.22081 1.14361 0.96414 0.79209 1.42672 0.98023 1.00570 1.01761 1.94678 1.49705 1.06447 1.89522 1.94441 1.50478 1.50404 1.37591 0.91450 0.91048 0.91574 0.72554 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.96 21.45 0.30 -57.23 14 2 C 0.03 1.61 5.47 84.65 0.46 2.07 14 3 Si 0.95 42.26 27.47 68.60 1.88 44.15 14 4 H -0.25 -10.59 7.11 99.48 0.71 -9.88 14 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 14 7 C -0.55 -32.31 9.94 25.60 0.25 -32.06 14 8 H 0.02 1.66 8.06 -2.91 -0.02 1.64 14 9 C 0.23 10.95 4.71 85.63 0.40 11.35 14 10 N -0.32 -14.11 3.60 -341.30 -1.23 -15.33 14 11 N -0.26 -9.61 12.58 -57.02 -0.72 -10.33 14 12 C 0.05 1.33 12.03 85.24 1.03 2.36 14 13 C -0.16 -4.40 10.49 21.99 0.23 -4.17 14 14 C 0.09 3.42 7.94 128.06 1.02 4.44 14 15 N 0.05 2.07 4.45 -49.91 -0.22 1.84 14 16 O -0.20 -9.45 16.78 18.89 0.32 -9.14 14 17 O -0.10 -3.64 19.03 18.89 0.36 -3.28 14 18 H 0.28 15.66 8.31 -92.71 -0.77 14.89 14 19 H 0.07 3.45 5.35 -2.39 -0.01 3.43 14 20 H 0.07 3.01 7.57 -2.39 -0.02 2.99 14 21 H 0.26 3.15 8.06 -2.91 -0.02 3.12 14 22 H 0.21 3.78 8.06 -2.91 -0.02 3.76 14 Total: -1.00 -71.20 214.59 5.28 -65.92 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.19 Total: -0.60 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.39 Total: -16.01 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.87 Total: -81.05 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.68 Total: -12.42 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Total: -71.20 5.28 -65.92 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236176.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.101 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds