Wall clock time and date at job start Sun Mar 29 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00582 * 2 1 4 4 H 1.08000 * 120.00176 * 202.35255 * 3 2 1 5 5 C 1.38816 * 119.99305 * 22.35267 * 3 2 1 6 6 N 1.31616 * 120.00342 * 11.33616 * 5 3 2 7 7 Si 1.86808 * 119.99583 * 191.34018 * 5 3 2 8 8 H 1.48495 * 109.47091 * 59.99738 * 7 5 3 9 9 H 1.48498 * 109.46853 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46914 * 299.99889 * 7 5 3 11 11 C 1.46504 * 119.99846 * 180.02562 * 2 1 3 12 12 C 1.50705 * 109.46906 * 270.00159 * 11 2 1 13 13 C 1.39671 * 127.05127 * 95.00108 * 12 11 2 14 14 N 1.31371 * 105.90066 * 179.73579 * 13 12 11 15 15 N 1.28601 * 108.71892 * 0.26222 * 14 13 12 16 16 C 1.46503 * 124.62082 * 179.97438 * 15 14 13 17 17 N 1.28599 * 110.76280 * 359.97438 * 15 14 13 18 18 H 1.08998 * 109.47235 * 274.21531 * 1 2 3 19 19 H 1.09007 * 109.46833 * 34.21319 * 1 2 3 20 20 H 1.08999 * 109.47334 * 154.21087 * 1 2 3 21 21 H 0.96996 * 120.00060 * 179.97438 * 6 5 3 22 22 H 1.08998 * 109.47128 * 150.00393 * 11 2 1 23 23 H 1.08997 * 109.47332 * 29.99774 * 11 2 1 24 24 H 1.08002 * 127.04715 * 359.97438 * 13 12 11 25 25 H 1.09005 * 109.47206 * 90.02231 * 16 15 14 26 26 H 1.08996 * 109.47219 * 210.02264 * 16 15 14 27 27 H 1.09000 * 109.46808 * 330.02967 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2209 -0.3557 5 6 1.5339 2.3429 0.4572 6 7 0.3842 2.2690 1.0937 7 14 2.3369 4.0047 0.1690 8 1 2.4919 4.2333 -1.2900 9 1 1.4847 5.0735 0.7493 10 1 3.6723 4.0284 0.8183 11 6 2.1974 -1.2688 -0.0006 12 6 2.4485 -1.7044 1.4201 13 6 1.6729 -2.5823 2.1807 14 7 2.2696 -2.6711 3.3477 15 7 3.3151 -1.9223 3.3347 16 6 4.2376 -1.7611 4.4614 17 7 3.4404 -1.3341 2.1980 18 1 -0.3633 0.0755 1.0249 19 1 -0.3633 0.8499 -0.5779 20 1 -0.3634 -0.9253 -0.4471 21 1 -0.0459 3.0774 1.4135 22 1 3.1499 -1.1382 -0.5143 23 1 1.6084 -2.0282 -0.5147 24 1 0.7699 -3.0877 1.8715 25 1 5.0272 -2.5096 4.3943 26 1 4.6780 -0.7646 4.4307 27 1 3.6938 -1.8896 5.3973 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307439779.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:02 Heat of formation + Delta-G solvation = 112.990089 kcal Electronic energy + Delta-G solvation = -12398.403742 eV Core-core repulsion = 10194.299188 eV Total energy + Delta-G solvation = -2204.104554 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.24377 -37.57375 -34.72720 -33.48372 -32.79857 -29.51236 -27.92765 -26.93704 -23.71016 -22.94460 -21.43531 -18.77746 -18.00591 -17.59109 -16.80385 -15.65847 -15.46837 -15.20711 -15.10054 -13.81569 -13.75566 -13.45096 -13.37100 -12.78017 -12.65833 -12.35811 -12.12673 -12.01523 -11.71253 -11.59888 -11.04557 -10.63496 -9.92868 -8.83269 -7.82075 -5.29664 1.01092 1.45074 1.47025 1.53591 1.67677 1.72271 2.53313 3.29294 3.43943 3.86483 4.13189 4.32057 4.32706 4.53588 4.57927 4.76782 4.91990 5.01337 5.36493 5.37760 5.45302 5.65455 5.77855 5.98908 6.33966 7.16779 7.56090 7.87558 8.29017 9.20953 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.011775 C = 0.010234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.505633 B = 2377.327339 C = 2735.341777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.069 0.931 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.967 3.033 8 H -0.272 1.272 9 H -0.295 1.295 10 H -0.281 1.281 11 C 0.225 3.775 12 C -0.013 4.013 13 C -0.033 4.033 14 N -0.314 5.314 15 N -0.174 5.174 16 C 0.100 3.900 17 N -0.313 5.313 18 H -0.005 1.005 19 H 0.021 0.979 20 H 0.045 0.955 21 H 0.246 0.754 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.217 0.783 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -8.745 2.589 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.198 1.198 9 H -0.221 1.221 10 H -0.208 1.208 11 C 0.096 3.904 12 C -0.178 4.178 13 C -0.215 4.215 14 N -0.157 5.157 15 N -0.076 5.076 16 C -0.038 4.038 17 N -0.156 5.156 18 H 0.013 0.987 19 H 0.040 0.960 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.233 0.767 25 H 0.128 0.872 26 H 0.120 0.880 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.497 -8.456 3.726 10.752 hybrid contribution -0.414 1.096 -0.332 1.217 sum 5.083 -7.361 3.394 9.568 Atomic orbital electron populations 1.20602 0.82029 0.96856 0.97311 1.44317 1.02434 1.01193 1.84606 1.19500 0.98057 0.86351 1.34448 0.91295 1.25793 0.98482 1.01878 0.98756 1.70246 1.19264 1.27312 1.41897 0.85346 0.77387 0.79595 0.78158 1.19803 1.22136 1.20759 1.19531 0.97065 0.87738 0.86059 1.24999 0.92760 0.97977 1.02090 1.24960 1.03422 1.03264 0.89841 1.73812 1.00819 1.16683 1.24363 1.48420 1.18674 1.29068 1.11445 1.22383 0.91544 1.05640 0.84253 1.74016 1.26633 1.19937 0.95011 0.98683 0.96037 0.93695 0.94523 0.92108 0.88047 0.76666 0.87208 0.88046 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.68 9.01 127.77 1.15 9.83 15 2 N -0.60 -30.51 2.91 -731.29 -2.13 -32.64 15 3 C -0.25 -14.25 9.67 84.03 0.81 -13.44 15 4 H 0.07 3.82 7.84 -2.91 -0.02 3.80 15 5 C -0.05 -3.14 5.13 84.86 0.44 -2.71 15 6 N -0.94 -57.20 10.58 21.65 0.23 -56.98 15 7 Si 0.97 46.43 29.57 68.60 2.03 48.46 15 8 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 9 H -0.30 -14.22 7.11 99.48 0.71 -13.52 15 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 15 11 C 0.22 9.17 6.30 85.63 0.54 9.71 15 12 C -0.01 -0.53 6.94 42.98 0.30 -0.24 15 13 C -0.03 -1.21 12.16 85.11 1.03 -0.18 15 14 N -0.31 -11.79 12.05 -56.87 -0.69 -12.47 15 15 N -0.17 -6.44 4.35 -206.55 -0.90 -7.34 15 16 C 0.10 2.38 11.57 127.77 1.48 3.86 15 17 N -0.31 -13.57 12.05 -47.25 -0.57 -14.14 15 18 H -0.01 -0.29 7.42 -2.39 -0.02 -0.31 15 19 H 0.02 1.13 7.19 -2.38 -0.02 1.11 15 20 H 0.04 1.77 7.84 -2.39 -0.02 1.75 15 21 H 0.25 14.61 8.31 -92.71 -0.77 13.84 15 22 H 0.06 2.45 8.03 -2.39 -0.02 2.43 15 23 H 0.10 3.30 7.86 -2.39 -0.02 3.28 15 24 H 0.22 6.27 8.06 -2.91 -0.02 6.25 15 25 H 0.11 1.94 8.14 -2.38 -0.02 1.92 15 26 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -72.44 240.59 4.88 -67.55 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: 1.15 Total: 0.71 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.75 Total: 6.84 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -4.05 Total: -123.57 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.44 4.88 -67.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307439779.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.545 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds