Wall clock time and date at job start Sun Mar 29 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 C 1.53000 * 115.56394 * 325.68954 * 3 2 1 5 5 C 1.53084 * 117.48992 * 111.39735 * 3 2 1 6 6 C 1.52999 * 117.49902 * 179.97438 * 3 2 1 7 7 H 1.09004 * 117.49859 * 0.03102 * 6 3 2 8 8 C 1.50703 * 117.50061 * 145.02244 * 6 3 2 9 9 O 1.21293 * 119.99482 * 359.91371 * 8 6 3 10 10 N 1.34777 * 120.00290 * 179.91808 * 8 6 3 11 11 C 1.37097 * 119.99758 * 180.02562 * 10 8 6 12 12 H 1.08002 * 120.00525 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99700 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99490 * 180.27578 * 13 11 10 15 15 Si 1.86800 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00134 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99981 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00017 * 15 13 11 19 19 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46913 * 300.00013 * 1 2 3 21 21 H 1.09000 * 109.47180 * 59.99837 * 1 2 3 22 22 H 1.08999 * 109.47631 * 239.99922 * 2 1 3 23 23 H 1.09000 * 109.47180 * 120.00163 * 2 1 3 24 24 H 1.08997 * 109.46990 * 274.31079 * 4 3 2 25 25 H 1.09000 * 109.46934 * 34.31113 * 4 3 2 26 26 H 1.08995 * 109.47311 * 154.30897 * 4 3 2 27 27 H 1.08994 * 117.49846 * 0.02562 * 5 3 2 28 28 H 1.09001 * 117.52548 * 214.95124 * 5 3 2 29 29 H 0.97000 * 119.99732 * 359.97438 * 10 8 6 30 30 H 0.97004 * 119.99472 * 179.72682 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 -0.7780 5 6 2.7427 1.9436 1.2644 6 6 3.5550 1.6562 0.0006 7 1 4.1884 0.7690 0.0005 8 6 4.0914 2.8378 -0.7656 9 8 3.3293 3.5757 -1.3538 10 7 5.4179 3.0745 -0.7975 11 6 5.9057 4.1498 -1.4941 12 1 5.2272 4.8070 -2.0178 13 6 7.2732 4.3942 -1.5265 14 7 7.7403 5.4280 -2.1898 15 14 8.4467 3.2580 -0.6202 16 1 8.8727 2.1614 -1.5265 17 1 9.6382 4.0267 -0.1792 18 1 7.7622 2.6827 0.5653 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.4777 2.4340 -1.8279 25 1 0.1339 2.1707 -0.6907 26 1 1.3351 3.4443 -0.3696 27 1 2.8417 1.2453 2.0954 28 1 2.5962 2.9874 1.5420 29 1 6.0272 2.4845 -0.3269 30 1 8.6946 5.6008 -2.2091 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307446359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:43 Heat of formation + Delta-G solvation = -21.324068 kcal Electronic energy + Delta-G solvation = -12541.918776 eV Core-core repulsion = 10337.811605 eV Total energy + Delta-G solvation = -2204.107171 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.32637 -36.81219 -33.89686 -32.00878 -31.55641 -27.69739 -25.57097 -23.69557 -22.57351 -19.30366 -18.79828 -17.66725 -16.14292 -14.88339 -14.77160 -14.39402 -13.76776 -13.54482 -12.92294 -12.54796 -12.30902 -12.21022 -11.95061 -11.76222 -11.33004 -11.21370 -10.87491 -10.60559 -10.54945 -9.96110 -9.76584 -9.44697 -9.31293 -8.27614 -8.14547 -6.29737 -3.80153 3.05043 3.09156 3.16626 3.52974 4.12163 4.24842 4.54733 5.03836 5.08615 5.22824 5.25500 5.42513 5.48443 5.68502 5.80608 5.89995 5.98718 6.09914 6.13785 6.21388 6.38300 6.43989 6.46848 6.61810 7.05920 7.60292 8.18064 8.63016 8.97273 9.46204 9.88881 10.83441 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064638 B = 0.008655 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.079096 B = 3234.504281 C = 3508.789982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.096 4.096 4 C -0.102 4.102 5 C -0.157 4.157 6 C -0.172 4.172 7 H 0.107 0.893 8 C 0.479 3.521 9 O -0.571 6.571 10 N -0.586 5.586 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.371 0.629 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 -10.936 6.715 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.194 4.194 6 C -0.194 4.194 7 H 0.125 0.875 8 C 0.265 3.735 9 O -0.455 6.455 10 N -0.224 5.224 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.705 3.295 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.194 1.194 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.204 0.796 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.298 -10.288 6.232 14.613 hybrid contribution 1.378 -0.818 0.716 1.755 sum -6.920 -11.106 6.948 14.816 Atomic orbital electron populations 1.21817 0.95653 1.00914 1.02271 1.21068 0.95916 0.93733 1.01626 1.21494 0.92061 0.96229 0.99837 1.21385 0.96171 0.97476 1.00807 1.23150 1.03329 1.02292 0.90653 1.22323 0.95013 0.99881 1.02179 0.87515 1.18933 0.82558 0.86794 0.85184 1.90544 1.56408 1.50197 1.48314 1.42204 1.05978 1.27030 1.47202 1.19459 0.92680 1.03912 1.27278 0.86290 1.25039 0.96818 0.96852 0.97461 1.69628 1.14340 1.27128 1.41108 0.86676 0.81558 0.81102 0.80134 1.19628 1.20169 1.19407 0.93226 0.92680 0.91952 0.91717 0.92123 0.91436 0.93581 0.91739 0.88914 0.88563 0.79626 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.92 37.16 0.33 -1.26 16 2 C -0.09 -1.06 6.12 -26.73 -0.16 -1.22 16 3 C -0.10 -1.50 2.47 -154.47 -0.38 -1.88 16 4 C -0.10 -1.73 7.73 37.16 0.29 -1.45 16 5 C -0.16 -2.40 9.53 -26.71 -0.25 -2.66 16 6 C -0.17 -3.08 5.90 -91.79 -0.54 -3.62 16 7 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 8 C 0.48 11.27 7.55 -10.98 -0.08 11.19 16 9 O -0.57 -15.28 12.68 5.55 0.07 -15.21 16 10 N -0.59 -14.51 5.09 -10.96 -0.06 -14.57 16 11 C -0.30 -8.80 10.16 -14.93 -0.15 -8.95 16 12 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -26.11 13.96 55.50 0.77 -25.34 16 15 Si 0.88 19.81 27.74 -169.99 -4.71 15.10 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.68 6.45 -51.93 -0.33 0.35 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 24 H 0.07 1.30 7.26 -51.93 -0.38 0.92 16 25 H 0.05 0.65 5.59 -51.93 -0.29 0.35 16 26 H 0.06 1.23 7.02 -51.93 -0.36 0.87 16 27 H 0.09 1.16 8.05 -51.93 -0.42 0.75 16 28 H 0.10 1.58 8.05 -51.93 -0.42 1.17 16 29 H 0.37 8.17 5.76 -40.82 -0.24 7.94 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 248.42 15.07 3.74 3.74 Total: -1.00 -31.32 248.42 -5.33 -36.65 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.09 Total: 8.41 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.05 Total: -8.79 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.72 Total: -39.90 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.07 Total: -15.21 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.32 -5.33 -36.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307446359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.322 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds