Wall clock time and date at job start Sun Mar 29 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 C 1.53000 * 115.56394 * 325.68954 * 3 2 1 5 5 C 1.53084 * 117.48992 * 111.39735 * 3 2 1 6 6 C 1.52999 * 117.49902 * 179.97438 * 3 2 1 7 7 H 1.09004 * 117.49859 * 0.03102 * 6 3 2 8 8 C 1.50703 * 117.50061 * 145.02244 * 6 3 2 9 9 O 1.21293 * 119.99482 * 359.91371 * 8 6 3 10 10 N 1.34777 * 120.00290 * 179.91808 * 8 6 3 11 11 C 1.37097 * 119.99758 * 180.02562 * 10 8 6 12 12 H 1.08002 * 120.00525 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99700 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99490 * 180.27578 * 13 11 10 15 15 Si 1.86800 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00134 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99981 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00017 * 15 13 11 19 19 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46913 * 300.00013 * 1 2 3 21 21 H 1.09000 * 109.47180 * 59.99837 * 1 2 3 22 22 H 1.08999 * 109.47631 * 239.99922 * 2 1 3 23 23 H 1.09000 * 109.47180 * 120.00163 * 2 1 3 24 24 H 1.08997 * 109.46990 * 274.31079 * 4 3 2 25 25 H 1.09000 * 109.46934 * 34.31113 * 4 3 2 26 26 H 1.08995 * 109.47311 * 154.30897 * 4 3 2 27 27 H 1.08994 * 117.49846 * 0.02562 * 5 3 2 28 28 H 1.09001 * 117.52548 * 214.95124 * 5 3 2 29 29 H 0.97000 * 119.99732 * 359.97438 * 10 8 6 30 30 H 0.97004 * 119.99472 * 179.72682 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 -0.7780 5 6 2.7427 1.9436 1.2644 6 6 3.5550 1.6562 0.0006 7 1 4.1884 0.7690 0.0005 8 6 4.0914 2.8378 -0.7656 9 8 3.3293 3.5757 -1.3538 10 7 5.4179 3.0745 -0.7975 11 6 5.9057 4.1498 -1.4941 12 1 5.2272 4.8070 -2.0178 13 6 7.2732 4.3942 -1.5265 14 7 7.7403 5.4280 -2.1898 15 14 8.4467 3.2580 -0.6202 16 1 8.8727 2.1614 -1.5265 17 1 9.6382 4.0267 -0.1792 18 1 7.7622 2.6827 0.5653 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.4777 2.4340 -1.8279 25 1 0.1339 2.1707 -0.6907 26 1 1.3351 3.4443 -0.3696 27 1 2.8417 1.2453 2.0954 28 1 2.5962 2.9874 1.5420 29 1 6.0272 2.4845 -0.3269 30 1 8.6946 5.6008 -2.2091 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307446359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:43 Heat of formation + Delta-G solvation = -42.948611 kcal Electronic energy + Delta-G solvation = -12542.856487 eV Core-core repulsion = 10337.811605 eV Total energy + Delta-G solvation = -2205.044882 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94684 -38.41276 -35.95162 -33.79325 -32.95490 -29.07171 -27.51056 -24.71596 -24.20409 -21.21887 -20.39042 -19.28129 -17.86379 -16.79868 -16.10255 -15.55728 -15.36467 -15.30441 -14.73817 -14.21607 -13.95898 -13.52749 -13.20887 -13.01128 -12.94717 -12.54449 -12.44514 -12.00302 -11.95980 -11.61331 -11.53352 -10.92195 -10.63134 -10.26328 -10.13182 -8.44437 -6.04695 1.28114 1.32264 1.42132 1.82334 2.20454 2.75677 2.92925 3.20137 3.78451 3.87930 4.01599 4.18098 4.39369 4.51321 4.62977 4.80512 4.89834 4.97258 5.01628 5.10413 5.18856 5.25801 5.39084 5.48664 5.53818 5.67895 5.93335 6.56522 6.85338 7.38243 7.95787 8.73322 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064638 B = 0.008655 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.079096 B = 3234.504281 C = 3508.789982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.099 4.099 5 C -0.136 4.136 6 C -0.190 4.190 7 H 0.141 0.859 8 C 0.474 3.526 9 O -0.614 6.614 10 N -0.589 5.589 11 C -0.331 4.331 12 H 0.055 0.945 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.235 1.235 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.389 0.611 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 -14.404 9.228 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.093 4.093 4 C -0.156 4.156 5 C -0.174 4.174 6 C -0.211 4.211 7 H 0.158 0.842 8 C 0.263 3.737 9 O -0.500 6.500 10 N -0.229 5.229 11 C -0.460 4.460 12 H 0.073 0.927 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.784 3.216 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.158 1.158 19 H 0.089 0.911 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.155 0.845 28 H 0.096 0.904 29 H 0.224 0.776 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.085 -13.769 8.754 18.210 hybrid contribution 1.165 0.368 -0.148 1.231 sum -6.920 -13.401 8.605 17.365 Atomic orbital electron populations 1.21814 0.94499 1.02296 1.02038 1.21109 0.96873 0.90877 1.02924 1.21697 0.90066 0.98059 0.99511 1.21299 0.98680 0.96699 0.98904 1.23280 1.00685 1.02444 0.90964 1.22299 0.96858 0.98267 1.03700 0.84167 1.20137 0.81859 0.87620 0.84116 1.90534 1.57421 1.52199 1.49838 1.42052 1.06873 1.26418 1.47526 1.19042 0.92709 1.05244 1.28984 0.92654 1.26113 0.98450 0.98736 0.97990 1.69803 1.15332 1.29544 1.42719 0.85368 0.78086 0.78493 0.79622 1.18043 1.19682 1.15796 0.91094 0.92177 0.92947 0.91664 0.89555 0.94630 0.90407 0.94889 0.84517 0.90433 0.77604 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.92 71.98 0.64 -1.98 16 2 C -0.08 -1.65 6.12 30.59 0.19 -1.46 16 3 C -0.09 -2.68 2.47 -52.15 -0.13 -2.81 16 4 C -0.10 -3.40 7.73 71.98 0.56 -2.84 16 5 C -0.14 -3.74 9.53 30.61 0.29 -3.45 16 6 C -0.19 -6.35 5.90 -11.55 -0.07 -6.42 16 7 H 0.14 3.77 8.14 -2.38 -0.02 3.75 16 8 C 0.47 22.68 7.55 87.66 0.66 23.34 16 9 O -0.61 -34.80 12.68 -3.07 -0.04 -34.84 16 10 N -0.59 -29.33 5.09 -306.97 -1.56 -30.90 16 11 C -0.33 -20.02 10.16 84.04 0.85 -19.17 16 12 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 13 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 14 N -0.93 -57.29 13.96 21.66 0.30 -56.99 16 15 Si 0.96 39.97 27.74 68.60 1.90 41.88 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.23 -8.36 6.52 99.48 0.65 -7.72 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.05 1.01 6.45 -2.39 -0.02 1.00 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 23 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 24 H 0.03 1.42 7.26 -2.39 -0.02 1.40 16 25 H 0.08 2.12 5.59 -2.39 -0.01 2.10 16 26 H 0.03 1.30 7.02 -2.39 -0.02 1.28 16 27 H 0.14 2.61 8.05 -2.39 -0.02 2.59 16 28 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 29 H 0.39 16.30 5.76 -92.71 -0.53 15.76 16 30 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -74.21 248.42 4.61 -69.61 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.54 Total: 26.36 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.46 Total: -15.13 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.26 Total: -87.88 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.84 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.90 Total: 41.88 kcal Total: -74.21 4.61 -69.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307446359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.659 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds