Wall clock time and date at job start Sun Mar 29 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47283 * 270.00254 * 3 2 1 5 5 H 1.48508 * 109.46783 * 29.99929 * 3 2 1 6 6 H 1.48500 * 109.47388 * 149.99921 * 3 2 1 7 7 C 1.37880 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99841 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00411 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47328 * 180.02562 * 9 7 2 11 11 C 1.50887 * 111.18566 * 73.42391 * 10 9 7 12 12 C 1.54379 * 103.48162 * 158.11446 * 11 10 9 13 13 H 1.09002 * 117.60642 * 197.14420 * 12 11 10 14 14 C 1.53003 * 118.12574 * 41.62148 * 12 11 10 15 15 C 1.53000 * 60.54746 * 266.77969 * 14 12 11 16 16 C 1.52999 * 119.52391 * 248.26576 * 15 14 12 17 17 O 1.42896 * 109.46801 * 250.69462 * 16 15 14 18 18 C 1.48565 * 110.99970 * 189.99956 * 10 9 7 19 19 H 0.97003 * 119.99997 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46812 * 59.99611 * 9 7 2 21 21 H 1.09004 * 109.46938 * 300.00168 * 9 7 2 22 22 H 1.08998 * 110.83308 * 39.76016 * 11 10 9 23 23 H 1.09003 * 111.06039 * 276.57796 * 11 10 9 24 24 H 1.08997 * 117.44121 * 14.43019 * 14 12 11 25 25 H 1.08998 * 117.44110 * 159.17189 * 14 12 11 26 26 H 1.09004 * 109.47263 * 10.69133 * 16 15 14 27 27 H 1.08998 * 109.47118 * 130.69327 * 16 15 14 28 28 H 0.96706 * 114.00204 * 180.02562 * 17 16 15 29 29 H 1.08999 * 110.40874 * 82.18114 * 18 10 9 30 30 H 1.08999 * 110.51413 * 319.78926 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0022 11 6 3.8039 -3.2261 -1.3510 12 6 4.8311 -4.3786 -1.3510 13 1 5.0913 -4.8234 -2.3115 14 6 4.9923 -5.2010 -0.0708 15 6 5.9073 -3.9989 -0.3130 16 6 7.3971 -4.2265 -0.5769 17 8 8.1538 -3.7831 0.5513 18 6 5.4665 -2.6260 0.2380 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8912 22 1 4.0224 -2.5224 -2.1542 23 1 2.7922 -3.6186 -1.4530 24 1 4.2206 -5.0992 0.6921 25 1 5.4328 -6.1937 -0.1637 26 1 7.5789 -5.2886 -0.7416 27 1 7.6995 -3.6648 -1.4607 28 1 9.1091 -3.8969 0.4536 29 1 5.6791 -2.5585 1.3049 30 1 5.9677 -1.8215 -0.3003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307517465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:04 Heat of formation + Delta-G solvation = -7.490695 kcal Electronic energy + Delta-G solvation = -12619.549183 eV Core-core repulsion = 10416.041871 eV Total energy + Delta-G solvation = -2203.507311 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55283 -36.44649 -34.07288 -32.08731 -28.50794 -27.87129 -25.78549 -23.76041 -21.08892 -19.52498 -18.81600 -17.23276 -16.67130 -15.72123 -14.86519 -14.34242 -14.06586 -13.47905 -12.97849 -12.75558 -12.64564 -12.11933 -12.04554 -11.37253 -11.02278 -10.87163 -10.64042 -10.27240 -10.11123 -9.76410 -9.67616 -9.27226 -9.17718 -8.55013 -7.51113 -6.02771 -3.99834 3.29596 3.37324 3.40470 3.71840 4.31034 4.44241 4.72422 4.93810 5.06331 5.16340 5.27115 5.31808 5.43244 5.65578 5.75527 6.03101 6.12261 6.24584 6.35337 6.44731 6.56902 6.58340 6.80511 6.89374 7.55342 7.61608 7.87001 7.89864 8.67843 9.06813 9.59122 11.10526 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.009149 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.240030 B = 3059.799719 C = 3400.949884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.153 3.847 10 N -0.503 5.503 11 C 0.072 3.928 12 C -0.161 4.161 13 H 0.108 0.892 14 C -0.129 4.129 15 C -0.150 4.150 16 C 0.127 3.873 17 O -0.565 6.565 18 C 0.076 3.924 19 H 0.263 0.737 20 H 0.029 0.971 21 H -0.014 1.014 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.374 0.626 29 H 0.078 0.922 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 -7.674 -2.884 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.026 3.974 10 N -0.228 5.228 11 C -0.055 4.055 12 C -0.179 4.179 13 H 0.126 0.874 14 C -0.166 4.166 15 C -0.151 4.151 16 C 0.048 3.952 17 O -0.370 6.370 18 C -0.052 4.052 19 H 0.073 0.927 20 H 0.047 0.953 21 H 0.004 0.996 22 H 0.065 0.935 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.220 0.780 29 H 0.096 0.904 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.225 -7.643 -2.240 15.438 hybrid contribution 1.407 1.307 -0.978 2.155 sum 14.631 -6.337 -3.218 16.266 Atomic orbital electron populations 1.69893 1.06094 1.26786 1.51230 1.24902 0.94746 0.98816 0.94908 0.86867 0.80419 0.84080 0.78437 1.20379 1.21090 1.19179 1.21005 0.88606 0.94770 1.50078 0.90162 1.20314 0.97359 0.84492 0.95224 1.65746 1.10311 1.20308 1.26405 1.22871 0.98502 0.92910 0.91231 1.23557 0.98970 1.01432 0.93989 0.87427 1.22915 1.01258 0.93251 0.99131 1.22334 0.90175 0.96759 1.05796 1.21388 0.89033 0.97061 0.87670 1.86558 1.21612 1.87056 1.41759 1.22338 0.89811 0.92339 1.00738 0.92688 0.95282 0.99621 0.93523 0.89456 0.87636 0.89105 0.93677 0.93731 0.77982 0.90378 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.51 -14.82 9.51 -34.44 -0.33 -15.15 16 8 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.15 3.88 3.68 -4.98 -0.02 3.86 16 10 N -0.50 -11.19 4.89 -229.32 -1.12 -12.31 16 11 C 0.07 1.41 6.23 -0.85 -0.01 1.41 16 12 C -0.16 -2.50 7.00 -89.23 -0.62 -3.12 16 13 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.13 -1.93 9.61 -26.73 -0.26 -2.19 16 15 C -0.15 -2.36 2.79 -153.13 -0.43 -2.79 16 16 C 0.13 1.56 7.37 37.16 0.27 1.84 16 17 O -0.57 -7.13 13.36 -35.23 -0.47 -7.60 16 18 C 0.08 1.46 5.85 -2.18 -0.01 1.45 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 21 H -0.01 -0.35 7.27 -51.93 -0.38 -0.73 16 22 H 0.05 0.91 7.83 -51.93 -0.41 0.50 16 23 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 24 H 0.11 1.80 8.00 -51.93 -0.42 1.38 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.47 8.04 -51.93 -0.42 0.05 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.37 2.67 9.12 45.56 0.42 3.08 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -32.60 250.44 -6.90 -39.50 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.69 Total: -0.59 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.50 Total: -12.79 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.35 Total: -39.59 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.47 Total: -7.60 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.60 -6.90 -39.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307517465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.007 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds