Wall clock time and date at job start Sun Mar 29 2020 21:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36870 * 120.00304 * 2 1 4 4 H 1.08001 * 120.00234 * 147.59721 * 3 2 1 5 5 C 1.39045 * 119.99919 * 327.87235 * 3 2 1 6 6 N 1.31369 * 119.99676 * 165.88214 * 5 3 2 7 7 Si 1.86788 * 120.00111 * 345.88846 * 5 3 2 8 8 H 1.48499 * 109.47511 * 87.19510 * 7 5 3 9 9 H 1.48496 * 109.47304 * 207.19599 * 7 5 3 10 10 H 1.48504 * 109.47264 * 327.19657 * 7 5 3 11 11 C 1.34786 * 119.99769 * 180.02562 * 2 1 3 12 12 O 1.21594 * 119.99921 * 185.03963 * 11 2 1 13 13 C 1.47752 * 119.99919 * 5.03406 * 11 2 1 14 14 N 1.34573 * 126.05198 * 185.41120 * 13 11 2 15 15 C 1.30872 * 107.26615 * 179.97438 * 14 13 11 16 16 N 1.34592 * 107.64057 * 359.97438 * 15 14 13 17 17 H 0.97003 * 125.74387 * 179.97438 * 16 15 14 18 18 N 1.28849 * 108.51222 * 359.75374 * 16 15 14 19 19 H 1.09006 * 109.47067 * 355.00383 * 1 2 3 20 20 H 1.09000 * 109.47499 * 114.99804 * 1 2 3 21 21 H 1.09001 * 109.47143 * 235.00358 * 1 2 3 22 22 H 0.97001 * 119.99916 * 180.02562 * 6 5 3 23 23 H 1.08007 * 126.17997 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1033 1.2581 0.5012 5 6 1.6139 2.2973 -0.6404 6 7 2.1156 3.4902 -0.4145 7 14 0.1812 2.0949 -1.8217 8 1 -1.0956 2.1509 -1.0655 9 1 0.2098 3.1881 -2.8263 10 1 0.2904 0.7848 -2.5124 11 6 2.1388 -1.1673 -0.0005 12 8 3.3513 -1.1694 0.0920 13 6 1.4043 -2.4443 -0.1134 14 7 1.9390 -3.6761 -0.0244 15 6 0.9633 -4.5349 -0.1764 16 7 -0.1718 -3.8349 -0.3583 17 1 -1.0544 -4.2125 -0.4973 18 7 0.1106 -2.5785 -0.3120 19 1 -0.3633 1.0238 0.0895 20 1 -0.3634 -0.4343 -0.9314 21 1 -0.3633 -0.5894 0.8419 22 1 1.7418 4.2660 -0.8609 23 1 1.0527 -5.6112 -0.1590 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307606953.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:32 Heat of formation + Delta-G solvation = 80.780826 kcal Electronic energy + Delta-G solvation = -12269.158428 eV Core-core repulsion = 9927.824081 eV Total energy + Delta-G solvation = -2341.334347 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.05562 -38.38751 -34.89081 -32.99011 -32.20727 -30.93258 -26.47089 -25.75809 -23.11389 -22.38567 -19.43214 -18.13425 -17.06784 -16.31947 -15.99813 -15.46084 -14.42197 -14.09698 -13.65471 -12.65641 -12.52998 -12.18835 -12.03002 -11.53854 -10.57339 -10.36269 -10.30805 -10.00282 -9.85822 -9.35924 -9.16278 -8.77745 -7.80369 -6.40452 -3.96841 1.81238 2.61210 2.93415 3.06333 3.23999 3.26437 4.00989 4.12477 4.23557 4.75770 4.87590 5.05610 5.40958 6.00527 6.22213 6.34771 6.45226 6.64580 6.97542 7.50076 8.18176 8.29636 8.55787 8.90361 9.26306 9.71661 10.70622 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.057043 B = 0.012898 C = 0.011025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.737376 B = 2170.356910 C = 2539.145569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.444 5.444 3 C -0.310 4.310 4 H 0.115 0.885 5 C 0.055 3.945 6 N -0.863 5.863 7 Si 0.893 3.107 8 H -0.273 1.273 9 H -0.290 1.290 10 H -0.264 1.264 11 C 0.539 3.461 12 O -0.542 6.542 13 C 0.180 3.820 14 N -0.469 5.469 15 C 0.181 3.819 16 N -0.415 5.415 17 H 0.444 0.556 18 N -0.293 5.293 19 H 0.078 0.922 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.276 0.724 23 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -12.523 -1.167 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.165 5.165 3 C -0.438 4.438 4 H 0.133 0.867 5 C -0.151 4.151 6 N -0.499 5.499 7 Si 0.721 3.279 8 H -0.200 1.200 9 H -0.217 1.217 10 H -0.189 1.189 11 C 0.324 3.676 12 O -0.419 6.419 13 C -0.100 4.100 14 N -0.194 5.194 15 C -0.117 4.117 16 N -0.136 5.136 17 H 0.289 0.711 18 N -0.133 5.133 19 H 0.096 0.904 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.308 -11.748 -1.133 15.031 hybrid contribution -1.541 -0.645 -0.755 1.833 sum -10.849 -12.393 -1.888 16.578 Atomic orbital electron populations 1.22222 0.82369 1.02287 1.01583 1.43452 1.04691 1.05066 1.63304 1.19238 1.06800 0.83903 1.33861 0.86705 1.25388 0.98252 0.94800 0.96667 1.69654 1.41565 0.98169 1.40556 0.86881 0.81583 0.78338 0.81121 1.19980 1.21675 1.18885 1.16311 0.86056 0.80310 0.84945 1.90690 1.12495 1.85312 1.53450 1.24603 0.86603 0.95335 1.03492 1.71325 1.30033 0.99058 1.18972 1.26629 0.82013 1.00923 1.02153 1.45191 1.12011 1.04273 1.52170 0.71094 1.74626 1.18006 0.98748 1.21909 0.90373 0.92246 0.92235 0.91310 0.76100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 6.70 59.85 0.40 1.68 14 2 N -0.44 -11.62 2.73 -123.31 -0.34 -11.96 14 3 C -0.31 -9.08 9.58 -15.00 -0.14 -9.23 14 4 H 0.12 3.73 7.76 -52.49 -0.41 3.32 14 5 C 0.06 1.55 5.30 -17.45 -0.09 1.45 14 6 N -0.86 -25.12 13.95 55.50 0.77 -24.34 14 7 Si 0.89 20.93 24.25 -169.99 -4.12 16.81 14 8 H -0.27 -5.87 6.46 56.52 0.37 -5.50 14 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 14 10 H -0.26 -6.22 6.66 56.52 0.38 -5.85 14 11 C 0.54 14.26 7.63 -12.37 -0.09 14.16 14 12 O -0.54 -16.21 16.88 5.28 0.09 -16.12 14 13 C 0.18 3.91 7.69 -156.33 -1.20 2.71 14 14 N -0.47 -9.08 11.41 -12.38 -0.14 -9.22 14 15 C 0.18 2.23 13.14 -90.47 -1.19 1.04 14 16 N -0.41 -4.90 6.93 29.57 0.20 -4.69 14 17 H 0.44 2.87 8.96 -190.21 -1.71 1.17 14 18 N -0.29 -5.16 8.98 32.06 0.29 -4.87 14 19 H 0.08 1.71 4.33 -51.93 -0.22 1.48 14 20 H 0.06 1.23 6.05 -51.93 -0.31 0.91 14 21 H 0.06 1.15 7.40 -51.93 -0.38 0.77 14 22 H 0.28 7.40 8.31 -40.82 -0.34 7.06 14 23 H 0.22 1.36 8.06 -52.48 -0.42 0.93 14 LS Contribution 206.27 15.07 3.11 3.11 Total: -1.00 -36.41 206.27 -5.11 -41.52 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.65 Total: -2.04 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -2.32 Total: 11.82 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.79 Total: -55.09 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.09 Total: -16.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.12 Total: 16.81 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -36.41 -5.11 -41.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307606953.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.300 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds