Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40586 * 127.38425 * 2 1 4 4 N 1.28909 * 106.81683 * 179.97438 * 3 2 1 5 5 N 1.28427 * 110.31815 * 359.72379 * 4 3 2 6 6 C 1.31477 * 110.50321 * 0.46260 * 5 4 3 7 7 N 1.38384 * 126.43515 * 179.81261 * 6 5 4 8 8 C 1.46499 * 120.00090 * 359.69165 * 7 6 5 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00025 * 14 12 10 17 17 H 1.48498 * 109.46942 * 239.99938 * 14 12 10 18 18 H 1.08994 * 109.47008 * 270.02758 * 1 2 3 19 19 H 1.09002 * 109.46672 * 30.02158 * 1 2 3 20 20 H 1.09000 * 109.47175 * 150.02293 * 1 2 3 21 21 H 0.97000 * 119.99489 * 179.68353 * 7 6 5 22 22 H 1.09002 * 109.47391 * 59.99630 * 8 7 6 23 23 H 1.09001 * 109.46813 * 299.99687 * 8 7 6 24 24 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 25 25 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 26 26 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3186 1.1171 0.0000 4 7 3.5255 0.6642 0.0006 5 7 3.5199 -0.6200 0.0067 6 6 2.2865 -1.0752 0.0006 7 7 1.9009 -2.4043 0.0008 8 6 2.9152 -3.4613 0.0015 9 6 2.2274 -4.8280 0.0022 10 6 3.2709 -5.9154 0.0035 11 1 4.3196 -5.6574 0.0034 12 6 2.8866 -7.2395 0.0049 13 7 1.6096 -7.5537 0.0055 14 14 4.1800 -8.5874 0.0058 15 1 5.5329 -7.9751 0.0056 16 1 4.0179 -9.4281 1.2192 17 1 4.0173 -9.4303 -1.2058 18 1 -0.3633 0.0005 1.0276 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8902 -0.5135 21 1 0.9589 -2.6359 0.0005 22 1 3.5372 -3.3674 0.8917 23 1 3.5378 -3.3679 -0.8883 24 1 1.6051 -4.9211 0.8922 25 1 1.6052 -4.9221 -0.8877 26 1 1.3392 -8.4852 0.0068 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307624741.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = 111.927481 kcal Electronic energy + Delta-G solvation = -11903.104710 eV Core-core repulsion = 9633.528167 eV Total energy + Delta-G solvation = -2269.576543 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.47599 -36.58186 -34.70584 -33.18918 -31.14358 -29.23853 -27.81908 -24.83672 -22.97255 -21.70072 -20.82456 -17.81659 -16.59069 -16.50477 -15.94135 -14.86921 -14.44035 -14.11822 -13.62472 -13.53908 -12.60680 -12.28695 -11.84594 -11.56053 -11.34285 -10.96437 -10.69987 -10.48180 -10.28203 -10.03890 -9.74767 -9.39573 -8.53772 -8.05109 -6.18369 -4.21634 1.49236 1.93032 2.83394 3.24084 3.31842 3.35740 3.43922 4.33245 4.36631 4.91962 5.00520 5.17478 5.19574 5.63794 5.70588 6.00701 6.17509 6.31774 6.57242 7.04951 7.42460 7.46101 7.57559 7.80182 8.16714 8.84158 8.96302 9.44111 10.93282 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.075435 B = 0.006722 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.089206 B = 4164.670256 C = 4510.010379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.433 5.433 3 N -0.117 5.117 4 N -0.023 5.023 5 N -0.378 5.378 6 C 0.504 3.496 7 N -0.684 5.684 8 C 0.137 3.863 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.063 0.937 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.081 0.919 19 H 0.097 0.903 20 H 0.089 0.911 21 H 0.410 0.590 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 9.631 -0.075 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.237 5.237 3 N -0.106 5.106 4 N -0.019 5.019 5 N -0.243 5.243 6 C 0.138 3.862 7 N -0.327 5.327 8 C 0.015 3.985 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.081 0.919 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.100 0.900 19 H 0.116 0.884 20 H 0.108 0.892 21 H 0.247 0.753 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.803 10.358 -0.072 11.034 hybrid contribution -0.848 -1.489 0.004 1.714 sum -4.651 8.869 -0.068 10.015 Atomic orbital electron populations 1.21933 0.73386 1.05096 1.04046 1.51125 1.08771 1.03997 1.59827 1.82391 0.95000 1.05893 1.27273 1.77773 1.13253 1.02958 1.07957 1.74854 1.14895 1.02668 1.31881 1.21871 0.86855 0.85061 0.92412 1.44426 1.11123 0.98268 1.78852 1.21954 0.89381 0.85595 1.01557 1.19354 0.96762 0.88358 0.98044 1.21032 0.93004 0.90396 1.51608 0.91914 1.24992 0.95493 0.98928 0.94811 1.69953 1.14807 1.18279 1.50222 0.86429 0.81770 0.81582 0.77655 1.19445 1.20907 1.20902 0.90009 0.88436 0.89207 0.75254 0.91872 0.91891 0.95767 0.95783 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.41 59.85 0.68 1.52 15 2 N -0.43 -6.22 4.09 -68.66 -0.28 -6.50 15 3 N -0.12 -1.96 13.93 60.35 0.84 -1.12 15 4 N -0.02 -0.43 13.38 60.35 0.81 0.38 15 5 N -0.38 -7.31 11.84 30.10 0.36 -6.95 15 6 C 0.50 8.46 8.71 -320.40 -2.79 5.67 15 7 N -0.68 -10.95 5.70 -61.85 -0.35 -11.31 15 8 C 0.14 2.65 5.96 -4.04 -0.02 2.62 15 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 15 10 C -0.52 -13.75 9.11 -34.44 -0.31 -14.07 15 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 13 N -0.89 -25.16 13.29 55.43 0.74 -24.43 15 14 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 18 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.10 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.09 0.60 7.64 -51.93 -0.40 0.20 15 21 H 0.41 5.49 7.90 -40.82 -0.32 5.17 15 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 239.26 15.07 3.61 3.61 Total: -1.00 -30.73 239.26 -4.79 -35.52 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -2.80 Total: -2.28 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.68 Total: -2.59 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 2.11 Total: -49.93 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.73 -4.79 -35.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307624741.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.443 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds