Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40586 * 127.38425 * 2 1 4 4 N 1.28909 * 106.81683 * 179.97438 * 3 2 1 5 5 N 1.28427 * 110.31815 * 359.72379 * 4 3 2 6 6 C 1.31477 * 110.50321 * 0.46260 * 5 4 3 7 7 N 1.38384 * 126.43515 * 179.81261 * 6 5 4 8 8 C 1.46499 * 120.00090 * 359.69165 * 7 6 5 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00025 * 14 12 10 17 17 H 1.48498 * 109.46942 * 239.99938 * 14 12 10 18 18 H 1.08994 * 109.47008 * 270.02758 * 1 2 3 19 19 H 1.09002 * 109.46672 * 30.02158 * 1 2 3 20 20 H 1.09000 * 109.47175 * 150.02293 * 1 2 3 21 21 H 0.97000 * 119.99489 * 179.68353 * 7 6 5 22 22 H 1.09002 * 109.47391 * 59.99630 * 8 7 6 23 23 H 1.09001 * 109.46813 * 299.99687 * 8 7 6 24 24 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 25 25 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 26 26 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3186 1.1171 0.0000 4 7 3.5255 0.6642 0.0006 5 7 3.5199 -0.6200 0.0067 6 6 2.2865 -1.0752 0.0006 7 7 1.9009 -2.4043 0.0008 8 6 2.9152 -3.4613 0.0015 9 6 2.2274 -4.8280 0.0022 10 6 3.2709 -5.9154 0.0035 11 1 4.3196 -5.6574 0.0034 12 6 2.8866 -7.2395 0.0049 13 7 1.6096 -7.5537 0.0055 14 14 4.1800 -8.5874 0.0058 15 1 5.5329 -7.9751 0.0056 16 1 4.0179 -9.4281 1.2192 17 1 4.0173 -9.4303 -1.2058 18 1 -0.3633 0.0005 1.0276 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8902 -0.5135 21 1 0.9589 -2.6359 0.0005 22 1 3.5372 -3.3674 0.8917 23 1 3.5378 -3.3679 -0.8883 24 1 1.6051 -4.9211 0.8922 25 1 1.6052 -4.9221 -0.8877 26 1 1.3392 -8.4852 0.0068 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307624741.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = 91.858888 kcal Electronic energy + Delta-G solvation = -11903.974950 eV Core-core repulsion = 9633.528167 eV Total energy + Delta-G solvation = -2270.446782 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.79158 -38.01949 -35.95363 -35.02518 -32.71972 -30.81130 -28.85354 -26.65731 -24.30363 -23.17050 -22.39051 -19.16400 -18.36615 -17.75268 -17.30117 -16.55147 -16.11222 -15.66971 -14.62220 -14.54296 -14.28499 -13.66961 -13.23020 -13.22133 -12.99509 -12.68129 -12.48746 -11.86158 -11.76639 -11.59051 -11.36382 -11.32480 -10.57015 -9.41399 -8.23073 -6.32122 0.20352 0.75769 1.43154 1.45759 1.46528 1.57671 2.19340 2.45175 3.13298 3.28911 3.86557 4.27605 4.32732 4.48717 4.51365 4.57214 4.69679 4.86864 5.05068 5.43178 5.59491 5.68561 5.86702 6.14906 6.38611 6.82160 7.37386 7.62873 8.88911 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.075435 B = 0.006722 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.089206 B = 4164.670256 C = 4510.010379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.416 5.416 3 N -0.114 5.114 4 N -0.046 5.046 5 N -0.409 5.409 6 C 0.497 3.503 7 N -0.675 5.675 8 C 0.159 3.841 9 C 0.022 3.978 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.961 3.039 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.279 1.279 18 H 0.103 0.897 19 H 0.118 0.882 20 H 0.111 0.889 21 H 0.424 0.576 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 9.841 -0.081 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.221 5.221 3 N -0.104 5.104 4 N -0.043 5.043 5 N -0.275 5.275 6 C 0.131 3.869 7 N -0.319 5.319 8 C 0.036 3.964 9 C -0.016 4.016 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.190 4.190 13 N -0.566 5.566 14 Si 0.786 3.214 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.205 1.205 18 H 0.121 0.879 19 H 0.137 0.863 20 H 0.130 0.870 21 H 0.264 0.736 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.346 10.597 -0.078 11.453 hybrid contribution -0.798 -1.475 0.007 1.677 sum -5.144 9.122 -0.070 10.472 Atomic orbital electron populations 1.22521 0.69818 1.07297 1.06165 1.51394 1.10423 1.02408 1.57855 1.82280 0.94977 1.06903 1.26193 1.77762 1.14116 1.02883 1.09518 1.74727 1.16864 1.03210 1.32681 1.21653 0.86856 0.85442 0.92924 1.43981 1.11157 0.97510 1.79300 1.21416 0.89332 0.84711 1.00909 1.19154 0.95922 0.89752 0.96760 1.21470 0.93780 0.91610 1.51157 0.91939 1.25800 0.97374 1.01259 0.94549 1.70045 1.16469 1.18869 1.51230 0.85447 0.79476 0.78752 0.77692 1.18839 1.20513 1.20497 0.87888 0.86337 0.87019 0.73599 0.92572 0.92555 0.96946 0.96925 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 11.41 127.77 1.46 2.58 15 2 N -0.42 -11.03 4.09 -371.15 -1.52 -12.55 15 3 N -0.11 -3.67 13.93 37.02 0.52 -3.16 15 4 N -0.05 -1.72 13.38 37.02 0.50 -1.22 15 5 N -0.41 -15.60 11.84 -58.69 -0.69 -16.30 15 6 C 0.50 16.01 8.71 260.65 2.27 18.28 15 7 N -0.67 -20.69 5.70 -349.58 -1.99 -22.68 15 8 C 0.16 6.08 5.96 86.38 0.51 6.60 15 9 C 0.02 1.00 5.09 29.85 0.15 1.15 15 10 C -0.54 -28.45 9.11 25.60 0.23 -28.21 15 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 15 12 C 0.01 0.48 5.46 84.66 0.46 0.95 15 13 N -0.93 -52.06 13.29 21.45 0.28 -51.78 15 14 Si 0.96 42.08 29.54 68.60 2.03 44.11 15 15 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 18 H 0.10 1.06 8.14 -2.39 -0.02 1.04 15 19 H 0.12 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.11 1.09 7.64 -2.39 -0.02 1.07 15 21 H 0.42 10.54 7.90 -92.71 -0.73 9.81 15 22 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 15 26 H 0.26 14.04 8.31 -92.71 -0.77 13.27 15 Total: -1.00 -64.86 239.26 4.67 -60.19 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 0.46 Total: 2.05 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.09 Total: 1.34 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -2.91 Total: -107.69 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.86 4.67 -60.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307624741.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.054 kcal (2) G-P(sol) polarization free energy of solvation -64.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds