Wall clock time and date at job start Sun Mar 29 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.46498 * 120.00546 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47493 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99570 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00049 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99864 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46804 * 60.00260 * 11 9 7 13 13 H 1.48504 * 109.46895 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47341 * 300.00421 * 11 9 7 15 15 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 16 16 C 1.53781 * 87.08260 * 220.02231 * 15 2 1 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 2 18 18 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 19 19 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 20 20 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 21 21 H 0.97001 * 119.99598 * 0.02562 * 5 3 2 22 22 H 1.08998 * 109.46877 * 300.00500 * 6 5 3 23 23 H 1.09002 * 109.47037 * 59.99656 * 6 5 3 24 24 H 0.96999 * 120.00330 * 179.97438 * 10 9 7 25 25 H 1.09001 * 113.61250 * 105.47049 * 15 2 1 26 26 H 1.08997 * 113.61225 * 334.56890 * 15 2 1 27 27 H 1.09002 * 113.61445 * 139.98212 * 16 15 2 28 28 H 1.09002 * 113.61408 * 270.79943 * 16 15 2 29 29 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 30 30 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.2369 3.6585 0.8779 7 6 1.5692 4.4850 1.9465 8 1 0.7982 4.0483 2.5639 9 6 1.9427 5.7987 2.1360 10 7 2.8813 6.3305 1.3839 11 14 1.1145 6.8234 3.4603 12 1 1.3371 6.1923 4.7860 13 1 1.6909 8.1920 3.4599 14 1 -0.3431 6.9005 3.1873 15 6 2.1460 -0.9281 -1.0601 16 6 3.1923 -1.3136 -0.0011 17 6 2.1479 -0.9296 1.0604 18 1 -0.3634 -1.0080 0.1995 19 1 -0.3634 0.6770 0.7732 20 1 -0.3633 0.3312 -0.9729 21 1 0.9704 2.0761 1.5105 22 1 3.3070 3.6022 1.0771 23 1 2.0724 4.1217 -0.0950 24 1 3.1438 7.2548 1.5169 25 1 2.5650 -0.3971 -1.9149 26 1 1.4945 -1.7523 -1.3505 27 1 3.4443 -2.3741 -0.0021 28 1 4.0717 -0.6696 -0.0014 29 1 1.4969 -1.7542 1.3508 30 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307694627.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:38 Heat of formation + Delta-G solvation = -35.434063 kcal Electronic energy + Delta-G solvation = -12561.254267 eV Core-core repulsion = 10356.535240 eV Total energy + Delta-G solvation = -2204.719026 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09636 -36.89725 -34.16487 -32.35423 -29.92592 -27.21007 -25.46315 -23.89982 -22.40651 -20.63668 -18.71497 -16.57917 -15.75997 -15.30356 -14.89794 -14.53680 -13.97886 -13.59945 -13.20270 -12.71218 -12.36248 -12.09131 -11.90651 -11.66190 -11.15487 -10.98243 -10.86959 -10.70414 -10.30231 -10.10177 -10.02914 -9.39768 -8.90334 -8.71808 -7.84794 -6.15638 -4.22671 3.25676 3.30356 3.31965 3.37016 4.07511 4.37360 4.68356 4.79444 5.00903 5.07283 5.20259 5.47035 5.60677 5.76939 5.82080 5.85126 5.97030 6.06290 6.17977 6.30145 6.43905 6.60465 7.32951 7.47398 7.53273 7.68486 7.98484 8.66622 8.79903 9.14481 9.44129 10.94577 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063354 B = 0.007941 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.853171 B = 3525.078572 C = 3702.252958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.522 3.478 4 O -0.554 6.554 5 N -0.709 5.709 6 C 0.250 3.750 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.064 3.936 10 N -0.886 5.886 11 Si 0.904 3.096 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.123 4.123 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.060 0.940 21 H 0.390 0.610 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.266 0.734 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -12.952 -0.105 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C 0.306 3.694 4 O -0.434 6.434 5 N -0.357 5.357 6 C 0.129 3.871 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.201 1.201 15 C -0.156 4.156 16 C -0.177 4.177 17 C -0.161 4.161 18 H 0.080 0.920 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.223 0.777 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.660 -12.511 -0.695 13.054 hybrid contribution -0.766 0.609 1.035 1.424 sum -4.426 -11.902 0.340 12.703 Atomic orbital electron populations 1.21700 0.92846 1.01962 1.02501 1.22042 0.96284 0.93552 0.99769 1.19799 0.82732 0.85550 0.81339 1.90631 1.31962 1.80660 1.40112 1.46424 1.40141 1.13896 1.35197 1.19098 0.94435 0.76080 0.97499 1.21195 1.21970 0.96679 1.18350 0.91974 1.24954 0.94992 0.97617 0.96440 1.69966 1.29161 1.14472 1.38723 0.86474 0.79584 0.79160 0.81687 1.20064 1.21044 1.20064 1.22799 0.97568 0.97800 0.97427 1.22811 0.97739 1.00875 0.96282 1.22970 0.98200 0.98277 0.96679 0.92019 0.92024 0.92131 0.77700 0.95602 0.95576 0.92393 0.90188 0.90061 0.91704 0.89718 0.89566 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.12 37.15 0.34 -1.34 16 2 C -0.11 -1.72 1.26 -154.76 -0.20 -1.92 16 3 C 0.52 10.85 6.66 -10.99 -0.07 10.77 16 4 O -0.55 -13.75 15.76 5.55 0.09 -13.66 16 5 N -0.71 -15.45 5.43 -61.48 -0.33 -15.79 16 6 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 11 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C -0.12 -1.64 7.02 -25.92 -0.18 -1.83 16 16 C -0.14 -1.88 7.73 -25.92 -0.20 -2.08 16 17 C -0.12 -1.61 7.23 -25.82 -0.19 -1.80 16 18 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 19 H 0.06 0.77 7.00 -51.93 -0.36 0.41 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.39 7.40 7.21 -40.82 -0.29 7.11 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.08 1.28 7.43 -51.93 -0.39 0.89 16 26 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.09 0.90 7.97 -51.93 -0.41 0.49 16 30 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 254.82 15.07 3.84 3.84 Total: -1.00 -31.47 254.82 -5.99 -37.46 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.36 Total: 2.85 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.94 Total: -5.05 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.40 Total: -41.41 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.47 -5.99 -37.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307694627.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.024 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds