Wall clock time and date at job start Sun Mar 29 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.46498 * 120.00546 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47493 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99570 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00049 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99864 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46804 * 60.00260 * 11 9 7 13 13 H 1.48504 * 109.46895 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47341 * 300.00421 * 11 9 7 15 15 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 16 16 C 1.53781 * 87.08260 * 220.02231 * 15 2 1 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 2 18 18 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 19 19 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 20 20 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 21 21 H 0.97001 * 119.99598 * 0.02562 * 5 3 2 22 22 H 1.08998 * 109.46877 * 300.00500 * 6 5 3 23 23 H 1.09002 * 109.47037 * 59.99656 * 6 5 3 24 24 H 0.96999 * 120.00330 * 179.97438 * 10 9 7 25 25 H 1.09001 * 113.61250 * 105.47049 * 15 2 1 26 26 H 1.08997 * 113.61225 * 334.56890 * 15 2 1 27 27 H 1.09002 * 113.61445 * 139.98212 * 16 15 2 28 28 H 1.09002 * 113.61408 * 270.79943 * 16 15 2 29 29 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 30 30 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.2369 3.6585 0.8779 7 6 1.5692 4.4850 1.9465 8 1 0.7982 4.0483 2.5639 9 6 1.9427 5.7987 2.1360 10 7 2.8813 6.3305 1.3839 11 14 1.1145 6.8234 3.4603 12 1 1.3371 6.1923 4.7860 13 1 1.6909 8.1920 3.4599 14 1 -0.3431 6.9005 3.1873 15 6 2.1460 -0.9281 -1.0601 16 6 3.1923 -1.3136 -0.0011 17 6 2.1479 -0.9296 1.0604 18 1 -0.3634 -1.0080 0.1995 19 1 -0.3634 0.6770 0.7732 20 1 -0.3633 0.3312 -0.9729 21 1 0.9704 2.0761 1.5105 22 1 3.3070 3.6022 1.0771 23 1 2.0724 4.1217 -0.0950 24 1 3.1438 7.2548 1.5169 25 1 2.5650 -0.3971 -1.9149 26 1 1.4945 -1.7523 -1.3505 27 1 3.4443 -2.3741 -0.0021 28 1 4.0717 -0.6696 -0.0014 29 1 1.4969 -1.7542 1.3508 30 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307694627.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:38 Heat of formation + Delta-G solvation = -57.597765 kcal Electronic energy + Delta-G solvation = -12562.215357 eV Core-core repulsion = 10356.535240 eV Total energy + Delta-G solvation = -2205.680117 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53581 -38.42605 -36.17052 -34.40902 -31.14915 -29.18664 -26.54973 -25.55027 -24.05123 -22.16580 -20.38853 -18.39540 -17.33936 -17.12151 -16.37271 -16.32858 -15.51198 -15.09388 -14.44219 -14.28514 -13.92458 -13.83032 -13.43140 -13.04988 -12.92753 -12.69427 -12.25060 -12.21590 -11.83203 -11.54809 -11.19371 -11.15811 -10.81516 -10.59861 -9.86304 -8.31267 -6.48822 1.41542 1.46108 1.54443 1.71236 2.30222 2.55330 3.03163 3.53555 3.65053 3.84276 3.93599 4.16695 4.57151 4.77053 4.82430 4.85537 4.88695 5.03922 5.07716 5.17838 5.19411 5.20947 5.34103 5.45407 5.55975 5.67210 5.81935 6.61743 6.88548 7.20568 7.46203 8.80918 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063354 B = 0.007941 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.853171 B = 3525.078572 C = 3702.252958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.513 3.487 4 O -0.604 6.604 5 N -0.704 5.704 6 C 0.266 3.734 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.987 3.013 12 H -0.261 1.261 13 H -0.284 1.284 14 H -0.261 1.261 15 C -0.114 4.114 16 C -0.143 4.143 17 C -0.110 4.110 18 H 0.101 0.899 19 H 0.059 0.941 20 H 0.054 0.946 21 H 0.407 0.593 22 H -0.015 1.015 23 H -0.015 1.015 24 H 0.269 0.731 25 H 0.048 0.952 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.131 0.869 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -14.802 1.545 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 C 0.301 3.699 4 O -0.486 6.486 5 N -0.353 5.353 6 C 0.144 3.856 7 C -0.596 4.596 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.809 3.191 12 H -0.186 1.186 13 H -0.210 1.210 14 H -0.185 1.185 15 C -0.151 4.151 16 C -0.181 4.181 17 C -0.147 4.147 18 H 0.120 0.880 19 H 0.078 0.922 20 H 0.073 0.927 21 H 0.243 0.757 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.975 -14.406 0.968 15.625 hybrid contribution 0.008 1.154 0.446 1.237 sum -5.967 -13.252 1.414 14.602 Atomic orbital electron populations 1.21742 0.90150 1.04434 1.02296 1.22059 0.98157 0.89701 1.02107 1.20982 0.81704 0.87610 0.79634 1.90602 1.34170 1.82001 1.41818 1.46183 1.40582 1.12288 1.36232 1.18538 0.92581 0.78863 0.95654 1.21580 1.22423 0.97159 1.18451 0.89814 1.26108 0.95418 0.99108 0.98997 1.70137 1.30941 1.15053 1.40863 0.85179 0.78728 0.76793 0.78356 1.18560 1.20964 1.18544 1.22898 0.98098 0.98195 0.95951 1.22792 0.96598 1.02136 0.96526 1.23049 0.98063 0.98403 0.95182 0.88001 0.92172 0.92678 0.75732 0.99726 0.99662 0.92177 0.93330 0.85882 0.88360 0.93440 0.85115 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.12 71.98 0.66 -2.16 16 2 C -0.12 -3.37 1.26 -52.34 -0.07 -3.43 16 3 C 0.51 21.96 6.66 87.66 0.58 22.55 16 4 O -0.60 -31.82 15.76 -3.04 -0.05 -31.86 16 5 N -0.70 -31.48 5.43 -466.80 -2.53 -34.01 16 6 C 0.27 15.21 5.43 85.63 0.46 15.67 16 7 C -0.56 -31.11 9.28 25.60 0.24 -30.88 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 11 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 15 C -0.11 -2.94 7.02 31.12 0.22 -2.72 16 16 C -0.14 -3.60 7.73 31.12 0.24 -3.36 16 17 C -0.11 -2.52 7.23 31.18 0.23 -2.30 16 18 H 0.10 1.46 7.95 -2.39 -0.02 1.44 16 19 H 0.06 1.33 7.00 -2.39 -0.02 1.31 16 20 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.41 15.24 7.21 -92.71 -0.67 14.57 16 22 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 23 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 26 H 0.12 2.18 8.10 -2.39 -0.02 2.16 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.13 1.94 7.97 -2.39 -0.02 1.93 16 30 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -72.75 254.82 3.20 -69.54 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.45 Total: 14.47 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 3.02 Total: -5.98 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.25 Total: -90.90 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.86 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -72.75 3.20 -69.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307694627.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.944 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds