Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 N 1.46904 * 109.47015 * 120.00068 * 2 1 3 13 13 C 1.46899 * 110.99846 * 275.00091 * 12 2 1 14 14 H 1.08998 * 109.35554 * 35.28067 * 13 12 2 15 15 C 1.50067 * 109.35950 * 275.68887 * 13 12 2 16 16 C 1.29439 * 124.07581 * 222.66607 * 15 13 12 17 17 C 1.50073 * 124.07440 * 0.46382 * 16 15 13 18 18 C 1.53022 * 110.15004 * 342.87220 * 17 16 15 19 19 C 1.53025 * 109.35587 * 154.99769 * 13 12 2 20 20 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99748 * 38.95287 * 12 2 1 25 25 H 1.07997 * 117.96245 * 42.63835 * 15 13 12 26 26 H 1.07992 * 117.96742 * 180.49208 * 16 15 13 27 27 H 1.08997 * 109.35565 * 222.66280 * 17 16 15 28 28 H 1.08998 * 109.24590 * 103.01417 * 17 16 15 29 29 H 1.08996 * 109.64318 * 289.75394 * 18 17 16 30 30 H 1.08998 * 109.81945 * 169.22143 * 18 17 16 31 31 H 1.09003 * 109.64787 * 289.33159 * 19 13 12 32 32 H 1.09000 * 109.64489 * 49.96308 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8281 -0.4192 -5.2204 11 1 3.8077 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2540 0.9288 2.2915 15 6 3.3791 0.9771 2.3111 16 6 4.1160 1.2025 3.3511 17 6 3.7817 0.7320 4.7364 18 6 2.3030 0.3470 4.8199 19 6 1.9766 -0.5824 3.6440 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7097 1.1618 -3.4844 24 1 1.4495 -1.4980 1.4100 25 1 3.7187 1.3553 1.3582 26 1 5.0279 1.7643 3.2135 27 1 3.9878 1.5308 5.4488 28 1 4.3952 -0.1356 4.9791 29 1 1.6869 1.2441 4.7597 30 1 2.1080 -0.1691 5.7599 31 1 0.9637 -0.9698 3.7534 32 1 2.6876 -1.4084 3.6217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307753266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = 0.989790 kcal Electronic energy + Delta-G solvation = -12432.170260 eV Core-core repulsion = 10392.175263 eV Total energy + Delta-G solvation = -2039.994997 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.41105 -35.20114 -32.37484 -30.67126 -29.57615 -26.48931 -25.08560 -22.18106 -21.91370 -19.92869 -17.38271 -16.43118 -15.56689 -14.78434 -14.53918 -13.72484 -13.42210 -12.90942 -12.40323 -12.36749 -11.91683 -11.91291 -11.54546 -11.04599 -10.88186 -10.80938 -10.48323 -10.34294 -10.10532 -9.90113 -9.57235 -8.94326 -8.57123 -8.32710 -7.19243 -5.95331 -3.98418 2.81183 3.36441 3.40079 3.43789 4.46767 5.04487 5.07491 5.10142 5.36008 5.50939 5.67928 5.77621 5.84048 5.89662 6.07082 6.09137 6.15082 6.26602 6.57694 6.66126 6.72530 6.86164 7.11499 7.20004 7.34151 7.50200 7.77576 7.92680 8.32145 8.59395 8.66957 9.08871 9.66747 11.11719 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060941 B = 0.008489 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.346958 B = 3297.484477 C = 3452.381170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.678 5.678 13 C 0.112 3.888 14 H 0.044 0.956 15 C -0.104 4.104 16 C -0.189 4.189 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.120 4.120 20 H 0.027 0.973 21 H 0.004 0.996 22 H 0.089 0.911 23 H 0.260 0.740 24 H 0.327 0.673 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -0.306 11.358 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.308 5.308 13 C 0.002 3.998 14 H 0.062 0.938 15 C -0.123 4.123 16 C -0.208 4.208 17 C -0.120 4.120 18 C -0.155 4.155 19 C -0.158 4.158 20 H 0.046 0.954 21 H 0.023 0.977 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.513 -0.106 11.026 11.309 hybrid contribution -0.640 -0.232 -0.814 1.061 sum 1.873 -0.338 10.212 10.388 Atomic orbital electron populations 1.22439 1.00831 0.99160 1.00434 1.19214 0.89469 0.94500 0.86586 0.94802 1.21137 1.30267 1.12271 0.89639 0.92026 1.24957 0.95364 0.95245 0.99015 1.69877 1.37362 1.23224 1.23385 0.86573 0.79179 0.79603 0.82084 1.20386 1.21477 1.20325 1.60836 1.58109 1.08749 1.03102 1.20298 0.94510 0.94128 0.90868 0.93796 1.22201 0.95772 0.96251 0.98086 1.21840 1.00290 1.04087 0.94558 1.20351 0.96202 1.00233 0.95171 1.21573 0.96423 0.99570 0.97927 1.21776 1.01218 0.98556 0.94259 0.95355 0.97680 0.89277 0.93056 0.85583 0.87683 0.88588 0.91984 0.91583 0.92073 0.92158 0.92323 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.92 37.16 0.33 -3.81 16 2 C 0.21 5.36 2.37 -68.86 -0.16 5.20 16 3 H 0.03 0.95 7.38 -51.93 -0.38 0.57 16 4 C -0.49 -13.90 8.84 -34.44 -0.30 -14.20 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.04 11.32 55.43 0.63 -25.41 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.68 -14.73 6.02 -102.48 -0.62 -15.35 16 13 C 0.11 2.09 2.57 -69.16 -0.18 1.91 16 14 H 0.04 0.87 7.10 -51.93 -0.37 0.51 16 15 C -0.10 -1.92 9.05 -35.90 -0.33 -2.24 16 16 C -0.19 -2.92 9.80 -35.90 -0.35 -3.27 16 17 C -0.08 -1.06 6.11 -28.17 -0.17 -1.23 16 18 C -0.12 -1.50 6.01 -26.51 -0.16 -1.66 16 19 C -0.12 -1.81 5.26 -26.51 -0.14 -1.95 16 20 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 21 H 0.00 0.09 7.42 -51.93 -0.39 -0.29 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.33 6.71 8.10 -39.29 -0.32 6.40 16 25 H 0.11 2.15 7.78 -52.49 -0.41 1.74 16 26 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 LS Contribution 257.42 15.07 3.88 3.88 Total: -1.00 -28.56 257.42 -7.79 -36.35 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.10 Total: 3.58 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.56 Total: -19.81 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.01 Total: -40.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.56 -7.79 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307753266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.339 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds