Wall clock time and date at job start Sun Mar 29 2020 21:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47201 * 2 1 4 4 C 1.50699 * 109.46953 * 120.00549 * 2 1 3 5 5 H 1.07999 * 119.99649 * 120.00153 * 4 2 1 6 6 C 1.37875 * 120.00119 * 300.27294 * 4 2 1 7 7 N 1.31511 * 120.00244 * 179.72418 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 359.72631 * 6 4 2 9 9 H 1.48501 * 109.46798 * 89.99663 * 8 6 4 10 10 H 1.48493 * 109.47062 * 209.99951 * 8 6 4 11 11 H 1.48503 * 109.46927 * 330.00318 * 8 6 4 12 12 N 1.46899 * 109.46874 * 240.00354 * 2 1 3 13 13 C 1.46901 * 111.00097 * 86.42583 * 12 2 1 14 14 H 1.08995 * 109.35681 * 325.26379 * 13 12 2 15 15 C 1.50067 * 109.36134 * 205.53456 * 13 12 2 16 16 C 1.29444 * 124.07841 * 222.64316 * 15 13 12 17 17 C 1.50068 * 124.07371 * 0.48743 * 16 15 13 18 18 C 1.53022 * 110.14964 * 342.87153 * 17 16 15 19 19 C 1.53025 * 109.35691 * 84.98425 * 13 12 2 20 20 H 1.08996 * 109.47357 * 305.87241 * 1 2 3 21 21 H 1.09007 * 109.46855 * 65.87349 * 1 2 3 22 22 H 1.09001 * 109.47471 * 185.86972 * 1 2 3 23 23 H 0.96997 * 119.99738 * 179.97438 * 7 6 4 24 24 H 1.00901 * 111.00452 * 322.47169 * 12 2 1 25 25 H 1.07999 * 117.95750 * 42.66215 * 15 13 12 26 26 H 1.08001 * 117.95976 * 180.51338 * 16 15 13 27 27 H 1.09001 * 109.35339 * 103.08156 * 17 16 15 28 28 H 1.09003 * 109.35554 * 222.80456 * 17 16 15 29 29 H 1.09001 * 109.64264 * 169.11727 * 18 17 16 30 30 H 1.08997 * 109.64280 * 289.54224 * 18 17 16 31 31 H 1.09001 * 109.64222 * 289.32884 * 19 13 12 32 32 H 1.09003 * 109.64541 * 49.95614 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2429 2.4827 7 7 2.1284 -0.8661 3.5564 8 14 0.6206 1.2759 2.6542 9 1 -0.8074 0.8705 2.6928 10 1 0.9673 1.9879 3.9103 11 1 0.8483 2.1765 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 2.1145 0.2306 -2.3384 14 1 1.3057 0.9590 -2.2813 15 6 1.9967 -0.5444 -3.6180 16 6 2.7363 -0.3398 -4.6605 17 6 3.8218 0.6939 -4.7316 18 6 3.6483 1.7185 -3.6083 19 6 3.4586 0.9603 -2.2892 20 1 -0.3634 0.6022 0.8327 21 1 -0.3633 0.4201 -0.9380 22 1 -0.3634 -1.0223 0.1051 23 1 1.8911 -0.5369 4.4374 24 1 1.4358 -1.4843 -1.4236 25 1 1.2482 -1.3210 -3.6726 26 1 2.5608 -0.9509 -5.5336 27 1 4.7916 0.2069 -4.6299 28 1 3.7726 1.2038 -5.6938 29 1 4.5364 2.3474 -3.5457 30 1 2.7742 2.3379 -3.8091 31 1 3.4618 1.6670 -1.4594 32 1 4.2639 0.2369 -2.1614 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307753268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:51 Heat of formation + Delta-G solvation = -10.696729 kcal Electronic energy + Delta-G solvation = -12503.942315 eV Core-core repulsion = 10463.440552 eV Total energy + Delta-G solvation = -2040.501762 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84480 -37.09683 -34.38146 -31.99347 -31.77782 -28.45286 -27.13443 -23.55812 -23.27498 -21.64312 -19.18036 -18.43091 -17.09307 -16.83182 -16.19473 -15.46500 -14.95893 -14.76938 -14.23092 -13.98768 -13.58775 -13.49345 -13.34888 -13.19682 -12.85578 -12.44144 -12.02972 -11.84875 -11.52302 -11.43978 -11.13169 -10.92525 -10.77106 -10.06000 -8.96775 -8.27686 -6.29803 1.27940 1.33593 1.40868 1.43744 2.31227 3.06252 3.54947 3.80520 3.97580 4.21525 4.42319 4.43725 4.47321 4.54708 4.55990 4.64846 4.70435 4.87607 4.91994 5.05058 5.07991 5.20073 5.33532 5.41557 5.49139 5.67003 5.79376 6.02575 6.09784 6.70892 6.75935 6.79468 7.35229 8.89967 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057313 B = 0.009218 C = 0.009126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.429547 B = 3036.939871 C = 3067.480504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.188 3.812 3 H 0.026 0.974 4 C -0.503 4.503 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.252 1.252 12 N -0.679 5.679 13 C 0.113 3.887 14 H 0.039 0.961 15 C -0.169 4.169 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.115 4.115 19 C -0.108 4.108 20 H 0.036 0.964 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.265 0.735 24 H 0.336 0.664 25 H 0.107 0.893 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 5.593 -16.637 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.078 3.922 3 H 0.043 0.957 4 C -0.541 4.541 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.224 1.224 11 H -0.177 1.177 12 N -0.309 5.309 13 C 0.004 3.996 14 H 0.057 0.943 15 C -0.187 4.187 16 C -0.160 4.160 17 C -0.127 4.127 18 C -0.153 4.153 19 C -0.147 4.147 20 H 0.055 0.945 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.154 0.846 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.525 5.646 -16.285 17.244 hybrid contribution -1.358 0.302 0.729 1.571 sum -1.883 5.948 -15.556 16.761 Atomic orbital electron populations 1.22728 0.99499 1.01392 0.99957 1.19433 0.89905 0.93977 0.88867 0.95653 1.21280 1.30115 1.12528 0.90216 0.94759 1.25807 0.97605 1.00051 0.95358 1.70046 1.48097 1.42574 0.98523 0.85819 0.79139 0.80019 0.77144 1.19216 1.22442 1.17673 1.60582 1.57162 1.10021 1.03143 1.20388 0.96861 0.93534 0.88824 0.94292 1.22157 1.01491 1.00778 0.94315 1.22296 0.96399 0.99181 0.98146 1.20527 0.97580 0.95287 0.99330 1.21608 1.02366 0.97711 0.93592 1.21580 0.96940 0.98460 0.97679 0.94499 0.92239 0.92626 0.92589 0.84594 0.87533 0.85879 0.90461 0.88912 0.90396 0.91700 0.93983 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.41 8.55 71.98 0.62 -6.80 16 2 C 0.19 8.95 1.97 44.17 0.09 9.03 16 3 H 0.03 1.26 6.29 -2.39 -0.02 1.24 16 4 C -0.50 -29.64 9.42 25.60 0.24 -29.40 16 5 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16 6 C 0.01 0.50 5.45 84.65 0.46 0.96 16 7 N -0.95 -60.84 13.96 21.45 0.30 -60.55 16 8 Si 0.95 45.76 24.31 68.60 1.67 47.43 16 9 H -0.27 -12.10 6.92 99.48 0.69 -11.41 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 12 N -0.68 -28.24 6.03 -478.16 -2.88 -31.13 16 13 C 0.11 3.83 2.55 43.98 0.11 3.94 16 14 H 0.04 1.35 7.19 -2.39 -0.02 1.33 16 15 C -0.17 -4.65 9.07 27.04 0.25 -4.40 16 16 C -0.14 -3.19 9.80 27.04 0.27 -2.92 16 17 C -0.09 -1.81 6.11 29.66 0.18 -1.63 16 18 C -0.11 -2.71 6.01 30.71 0.18 -2.52 16 19 C -0.11 -3.54 5.41 30.71 0.17 -3.37 16 20 H 0.04 1.58 3.43 -2.39 -0.01 1.57 16 21 H 0.06 2.09 7.48 -2.38 -0.02 2.07 16 22 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.34 13.11 7.99 -89.69 -0.72 12.40 16 25 H 0.11 2.73 7.95 -2.91 -0.02 2.71 16 26 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 32 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -66.36 250.41 1.94 -64.43 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.29 Total: 16.93 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.56 Total: -37.12 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -2.59 Total: -91.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -66.36 1.94 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307753268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.731 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds