Wall clock time and date at job start Sun Mar 29 2020 22:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 112.84777 * 2 1 4 4 C 1.53787 * 113.61084 * 131.19440 * 2 1 3 5 5 C 1.53776 * 87.07755 * 89.11635 * 4 2 1 6 6 C 1.50696 * 113.61636 * 270.79461 * 5 4 2 7 7 O 1.21291 * 120.00246 * 129.94932 * 6 5 4 8 8 N 1.34777 * 120.00064 * 309.95253 * 6 5 4 9 9 C 1.37094 * 120.00207 * 179.97438 * 8 6 5 10 10 H 1.08004 * 120.00256 * 0.02562 * 9 8 6 11 11 C 1.38957 * 119.99875 * 179.97438 * 9 8 6 12 12 N 1.31405 * 119.99929 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99631 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47122 * 89.99942 * 13 11 9 15 15 H 1.48499 * 109.46756 * 209.99709 * 13 11 9 16 16 H 1.48497 * 109.47420 * 329.99709 * 13 11 9 17 17 C 1.53778 * 87.17632 * 25.38795 * 5 4 2 18 18 H 1.09003 * 109.46839 * 281.86437 * 1 2 3 19 19 H 1.09002 * 109.46825 * 41.86548 * 1 2 3 20 20 H 1.08995 * 109.47144 * 161.86550 * 1 2 3 21 21 H 1.08997 * 109.46797 * 191.19826 * 3 2 1 22 22 H 1.08999 * 109.47254 * 311.19084 * 3 2 1 23 23 H 1.08993 * 109.47503 * 71.19869 * 3 2 1 24 24 H 1.08997 * 113.61596 * 334.56828 * 4 2 1 25 25 H 1.09002 * 113.60689 * 203.66062 * 4 2 1 26 26 H 1.09000 * 113.61415 * 139.97837 * 5 4 2 27 27 H 0.97004 * 119.99955 * 359.97438 * 8 6 5 28 28 H 0.97001 * 119.99818 * 180.02562 * 12 11 9 29 29 H 1.09001 * 113.61360 * 89.15921 * 17 5 4 30 30 H 1.09005 * 113.61408 * 220.06259 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1461 -0.9281 1.0603 5 6 2.0929 -2.0425 0.0021 6 6 0.7996 -2.8159 0.0041 7 8 0.1954 -2.9901 -1.0331 8 7 0.3140 -3.3139 1.1585 9 6 -0.8629 -4.0170 1.1605 10 1 -1.4008 -4.1722 0.2369 11 6 -1.3632 -4.5309 2.3507 12 7 -0.7079 -4.3434 3.4742 13 14 -2.9665 -5.4896 2.3532 14 1 -2.6815 -6.9312 2.1394 15 1 -3.6494 -5.3083 3.6594 16 1 -3.8430 -4.9912 1.2630 17 6 2.1448 -0.9317 -1.0601 18 1 -0.3633 0.2113 1.0058 19 1 -0.3633 0.7653 -0.6859 20 1 -0.3633 -0.9766 -0.3198 21 1 3.1942 1.3533 -0.1996 22 1 1.6416 2.0076 -0.7733 23 1 1.9601 1.8734 0.9727 24 1 1.4945 -1.1068 1.9157 25 1 3.1591 -0.6486 1.3496 26 1 2.9717 -2.6874 0.0027 27 1 0.7973 -3.1748 1.9881 28 1 -1.0570 -4.7024 4.3050 29 1 3.1576 -0.6533 -1.3516 30 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307761250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:39 Heat of formation + Delta-G solvation = -53.614156 kcal Electronic energy + Delta-G solvation = -12907.276690 eV Core-core repulsion = 10701.769316 eV Total energy + Delta-G solvation = -2205.507374 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51273 -38.63219 -35.96347 -33.28670 -31.69172 -28.30138 -27.34530 -26.44594 -24.35128 -20.94070 -19.94908 -18.96922 -17.58037 -16.77653 -16.45431 -15.88764 -15.25432 -14.98741 -14.39211 -14.21224 -13.69672 -13.43219 -13.40603 -12.95264 -12.65094 -12.48161 -12.40408 -12.16165 -11.94501 -11.68290 -11.52293 -10.94613 -10.83215 -10.28176 -10.01571 -8.47566 -5.96360 1.36132 1.39457 1.52403 2.05370 2.28606 3.16841 3.22127 3.59356 3.72875 3.82939 4.02671 4.40751 4.50746 4.64252 4.77774 4.85281 4.89693 4.98117 5.00863 5.06240 5.24860 5.28848 5.33769 5.40377 5.52432 5.68535 6.00162 6.58865 7.11395 7.56617 8.12006 8.69965 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056650 B = 0.009652 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.145044 B = 2900.374807 C = 2972.787563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.463 3.537 7 O -0.637 6.637 8 N -0.568 5.568 9 C -0.335 4.335 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.274 1.274 17 C -0.106 4.106 18 H 0.047 0.953 19 H 0.064 0.936 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.395 0.605 28 H 0.278 0.722 29 H 0.117 0.883 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 8.437 -1.613 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.181 4.181 4 C -0.154 4.154 5 C -0.157 4.157 6 C 0.252 3.748 7 O -0.526 6.526 8 N -0.203 5.203 9 C -0.465 4.465 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.199 1.199 17 C -0.143 4.143 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.138 0.862 26 H 0.125 0.875 27 H 0.229 0.771 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.972 8.260 -2.077 10.402 hybrid contribution -0.784 -0.786 0.514 1.223 sum 5.188 7.474 -1.563 9.231 Atomic orbital electron populations 1.21749 0.95292 1.01641 1.01102 1.21802 0.94273 0.96069 0.96470 1.21672 1.01116 0.93285 1.02073 1.23138 1.02654 0.94102 0.95503 1.22289 0.95220 0.96883 1.01313 1.20289 0.88163 0.83030 0.83322 1.90465 1.63348 1.65169 1.33584 1.41917 1.21652 1.47991 1.08754 1.19668 1.00292 1.31179 0.95315 0.90508 1.26036 1.02622 0.98514 0.94021 1.69676 1.40849 1.46269 0.99193 0.84952 0.77305 0.78343 0.77888 1.19559 1.19389 1.19853 1.23010 1.02110 0.93465 0.95763 0.93344 0.91687 0.94311 0.90607 0.92334 0.92082 0.92940 0.86234 0.87483 0.77062 0.91277 0.86465 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.87 71.99 0.64 -4.48 16 2 C -0.09 -2.57 1.39 -51.59 -0.07 -2.64 16 3 C -0.12 -2.67 9.18 71.98 0.66 -2.01 16 4 C -0.12 -3.54 6.73 31.12 0.21 -3.33 16 5 C -0.14 -4.93 4.36 -11.02 -0.05 -4.98 16 6 C 0.46 22.99 5.02 87.66 0.44 23.43 16 7 O -0.64 -36.64 14.82 -3.06 -0.05 -36.68 16 8 N -0.57 -30.19 5.08 -306.98 -1.56 -31.75 16 9 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 12 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 13 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 C -0.11 -3.30 6.77 31.18 0.21 -3.09 16 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 19 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 20 H 0.04 1.77 4.85 -2.39 -0.01 1.75 16 21 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 22 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.83 7.26 -2.39 -0.02 1.82 16 25 H 0.12 2.72 8.10 -2.39 -0.02 2.70 16 26 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 27 H 0.40 20.23 7.14 -92.71 -0.66 19.57 16 28 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.12 2.72 7.98 -2.39 -0.02 2.70 16 30 H 0.05 1.89 7.43 -2.38 -0.02 1.88 16 Total: -1.00 -66.61 248.08 4.49 -62.12 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.47 Total: 26.77 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 3.32 Total: -16.00 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.28 Total: -81.95 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.05 Total: -36.68 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.61 4.49 -62.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307761250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.503 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds