Wall clock time and date at job start Sun Mar 29 2020 21:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47041 * 2 1 4 4 C 1.36938 * 119.99613 * 94.57317 * 3 2 1 5 5 H 1.07999 * 120.00013 * 37.68228 * 4 3 2 6 6 C 1.38813 * 119.99686 * 217.40680 * 4 3 2 7 7 N 1.31619 * 119.99792 * 212.15271 * 6 4 3 8 8 Si 1.86802 * 119.99939 * 32.14780 * 6 4 3 9 9 H 1.48491 * 109.47045 * 86.02115 * 8 6 4 10 10 H 1.48501 * 109.46795 * 206.02008 * 8 6 4 11 11 H 1.48500 * 109.47261 * 326.01874 * 8 6 4 12 12 C 1.46503 * 120.00090 * 274.56980 * 3 2 1 13 13 C 1.50705 * 109.47101 * 275.36818 * 12 3 2 14 14 C 1.35446 * 126.77525 * 89.99809 * 13 12 3 15 15 C 1.41379 * 103.98431 * 179.97438 * 14 13 12 16 16 N 1.30167 * 106.39558 * 0.02562 * 15 14 13 17 17 O 1.20915 * 111.60450 * 359.72573 * 16 15 14 18 18 H 1.09003 * 109.47047 * 64.92292 * 1 2 3 19 19 H 1.09001 * 109.47229 * 184.92173 * 1 2 3 20 20 H 1.08999 * 109.46925 * 304.92084 * 1 2 3 21 21 H 1.09005 * 109.46607 * 240.00501 * 2 1 3 22 22 H 1.08991 * 109.47149 * 120.00473 * 2 1 3 23 23 H 0.97004 * 119.99834 * 180.02562 * 7 6 4 24 24 H 1.08999 * 109.46872 * 35.36626 * 12 3 2 25 25 H 1.09000 * 109.47131 * 155.37120 * 12 3 2 26 26 H 1.08002 * 128.00640 * 359.97438 * 14 13 12 27 27 H 1.08011 * 126.79873 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3357 1.9952 1.1822 5 1 2.8123 1.4331 1.9717 6 6 2.0500 3.3414 1.3636 7 7 2.8328 4.0846 2.1168 8 14 0.5545 4.0982 0.5388 9 1 -0.6395 3.8974 1.3985 10 1 0.7820 5.5521 0.3395 11 1 0.3323 3.4469 -0.7771 12 6 2.1672 2.1056 -1.2647 13 6 3.5044 1.7771 -1.8773 14 6 3.7761 0.7665 -2.7372 15 6 5.1585 0.9038 -2.9999 16 7 5.5638 1.9295 -2.3085 17 8 4.6585 2.4304 -1.6828 18 1 -0.3633 0.4356 -0.9308 19 1 -0.3634 -1.0239 0.0882 20 1 -0.3633 0.5883 0.8426 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 2.6329 5.0253 2.2439 24 1 1.3717 1.8097 -1.9486 25 1 2.1064 3.1778 -1.0786 26 1 3.0946 0.0271 -3.1310 27 1 5.7594 0.2804 -3.6456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308004084.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:19 Heat of formation + Delta-G solvation = 66.704974 kcal Electronic energy + Delta-G solvation = -12612.528415 eV Core-core repulsion = 10374.124037 eV Total energy + Delta-G solvation = -2238.404378 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.62415 -38.18718 -34.64115 -34.04819 -33.21734 -30.90117 -27.83357 -25.60462 -24.14770 -22.67111 -21.73096 -19.27136 -18.34044 -17.81334 -16.92288 -16.16506 -15.92229 -15.23538 -14.85116 -14.17297 -13.98026 -13.87555 -13.53360 -12.94500 -12.64521 -12.49080 -12.21710 -11.96518 -11.58594 -11.44639 -11.29527 -10.61937 -10.21470 -8.91143 -8.26713 -5.57537 0.67162 1.38037 1.47372 1.53806 1.54209 2.40699 2.44839 3.00102 3.45461 3.65370 3.86891 4.28851 4.42131 4.43849 4.60649 4.82605 4.84953 4.87599 4.95733 5.11496 5.29013 5.34842 5.59136 5.89769 6.18388 6.93496 7.44848 7.58827 8.00307 8.92973 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.015620 C = 0.012511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.608335 B = 1792.144085 C = 2237.574070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.280 4.280 5 H 0.031 0.969 6 C -0.006 4.006 7 N -0.928 5.928 8 Si 0.920 3.080 9 H -0.288 1.288 10 H -0.301 1.301 11 H -0.223 1.223 12 C 0.207 3.793 13 C -0.035 4.035 14 C -0.241 4.241 15 C -0.005 4.005 16 N -0.417 5.417 17 O 0.053 5.947 18 H 0.057 0.943 19 H 0.074 0.926 20 H 0.032 0.968 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.265 0.735 24 H 0.116 0.884 25 H 0.056 0.944 26 H 0.202 0.798 27 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -7.845 -11.548 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.409 4.409 5 H 0.049 0.951 6 C -0.205 4.205 7 N -0.569 5.569 8 Si 0.745 3.255 9 H -0.215 1.215 10 H -0.228 1.228 11 H -0.145 1.145 12 C 0.080 3.920 13 C -0.101 4.101 14 C -0.263 4.263 15 C -0.183 4.183 16 N -0.128 5.128 17 O -0.004 6.004 18 H 0.076 0.924 19 H 0.093 0.907 20 H 0.051 0.949 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.134 0.866 25 H 0.074 0.926 26 H 0.219 0.781 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.091 -7.079 -11.259 13.654 hybrid contribution -0.790 0.261 0.212 0.859 sum -3.881 -6.818 -11.046 13.549 Atomic orbital electron populations 1.22217 0.97175 1.01562 1.01152 1.21111 0.93495 0.83911 1.00258 1.44212 1.74477 1.12767 1.00505 1.18481 1.34687 0.93684 0.94092 0.95141 1.26112 0.99537 0.96972 0.97924 1.70171 1.36260 1.06805 1.43652 0.86315 0.81471 0.76619 0.81111 1.21528 1.22791 1.14540 1.20255 0.86824 0.97282 0.87654 1.26673 0.91444 0.95007 0.97016 1.22925 0.96781 1.02837 1.03769 1.25673 0.95405 0.96598 1.00663 1.73842 1.13880 1.14327 1.10728 1.84843 1.14682 1.47538 1.53320 0.92440 0.90720 0.94907 0.91283 0.94095 0.92627 0.86616 0.92582 0.78097 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 10.24 71.98 0.74 -4.09 15 2 C 0.14 4.76 6.41 86.38 0.55 5.32 15 3 N -0.60 -26.37 2.03 -706.32 -1.44 -27.81 15 4 C -0.28 -15.59 9.78 84.03 0.82 -14.76 15 5 H 0.03 1.93 8.06 -2.91 -0.02 1.91 15 6 C -0.01 -0.36 5.04 84.86 0.43 0.07 15 7 N -0.93 -57.71 13.97 21.65 0.30 -57.41 15 8 Si 0.92 42.67 26.49 68.60 1.82 44.49 15 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 10 H -0.30 -14.27 7.11 99.48 0.71 -13.56 15 11 H -0.22 -8.82 5.49 99.48 0.55 -8.27 15 12 C 0.21 8.13 4.42 85.63 0.38 8.51 15 13 C -0.03 -1.34 7.07 25.04 0.18 -1.16 15 14 C -0.24 -7.10 11.09 22.40 0.25 -6.85 15 15 C 0.00 -0.15 12.17 85.71 1.04 0.90 15 16 N -0.42 -16.79 12.07 -59.29 -0.72 -17.51 15 17 O 0.05 2.42 11.20 71.69 0.80 3.22 15 18 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 20 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 21 H 0.07 1.99 8.11 -2.38 -0.02 1.97 15 22 H 0.04 1.53 8.00 -2.39 -0.02 1.51 15 23 H 0.26 15.57 8.31 -92.71 -0.77 14.79 15 24 H 0.12 3.55 8.09 -2.39 -0.02 3.53 15 25 H 0.06 2.45 4.44 -2.39 -0.01 2.44 15 26 H 0.20 4.13 8.06 -2.91 -0.02 4.11 15 27 H 0.22 4.48 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -68.66 237.23 6.15 -62.52 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.99 Total: 4.57 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 4.39 Total: -12.07 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -1.85 Total: -102.73 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.80 Total: 3.22 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.82 Total: 44.49 kcal Total: -68.66 6.15 -62.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308004084.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.220 kcal (2) G-P(sol) polarization free energy of solvation -68.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds