Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31432 * 1 3 3 Si 1.86810 * 119.99845 * 2 1 4 4 H 1.48498 * 109.47093 * 270.00344 * 3 2 1 5 5 H 1.48500 * 109.46823 * 30.00472 * 3 2 1 6 6 H 1.48503 * 109.46905 * 149.99808 * 3 2 1 7 7 C 1.38756 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99348 * 359.97438 * 7 2 1 9 9 O 1.34912 * 120.00400 * 180.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9 14 14 C 1.34508 * 125.79205 * 89.99904 * 13 12 10 15 15 C 1.41386 * 106.84245 * 180.02562 * 14 13 12 16 16 C 1.34515 * 106.83707 * 0.02562 * 15 14 13 17 17 O 1.34299 * 125.78541 * 269.69025 * 13 12 10 18 18 H 0.97005 * 120.00610 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46932 * 300.00352 * 12 10 9 20 20 H 1.08997 * 109.47392 * 59.99690 * 12 10 9 21 21 H 1.08004 * 126.58159 * 0.03376 * 14 13 12 22 22 H 1.07995 * 126.57789 * 179.97438 * 15 14 13 23 23 H 1.07996 * 125.78671 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0005 9 8 3.3573 -1.2016 0.0000 10 6 3.9672 -2.3983 0.0000 11 8 3.3070 -3.4149 -0.0001 12 6 5.4721 -2.4772 -0.0001 13 6 5.8994 -3.9223 -0.0007 14 6 6.1225 -4.6761 -1.0921 15 6 6.5011 -5.9589 -0.6336 16 6 6.4862 -5.9122 0.7107 17 8 6.1278 -4.6742 1.0884 18 1 -0.4851 0.8400 0.0004 19 1 5.8618 -1.9829 -0.8901 20 1 5.8619 -1.9830 0.8899 21 1 6.0303 -4.3619 -2.1213 22 1 6.7531 -6.8125 -1.2453 23 1 6.7276 -6.7298 1.3737 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308085060.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = -86.952754 kcal Electronic energy + Delta-G solvation = -11776.416471 eV Core-core repulsion = 9363.223149 eV Total energy + Delta-G solvation = -2413.193323 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.48836 -41.12704 -37.51346 -34.53678 -34.12982 -33.09883 -28.84400 -27.04820 -22.72911 -22.58871 -21.10863 -20.17534 -18.75809 -18.22249 -17.10516 -16.97743 -16.44378 -15.91327 -15.25948 -14.53643 -14.19973 -13.99834 -13.73156 -13.54733 -13.26109 -12.72242 -12.38868 -12.26598 -11.86312 -11.23099 -10.84253 -10.82714 -9.42032 -8.55354 -6.43667 0.71155 1.28538 1.36126 1.53126 1.58902 1.68645 2.06369 2.28797 2.61046 2.90410 3.63621 4.14674 4.15527 4.34133 4.41590 4.46537 4.92122 5.01683 5.19058 5.46671 5.63086 5.87730 6.20386 6.51130 6.80527 7.54198 8.57687 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.081540 B = 0.008391 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.306435 B = 3335.909910 C = 3491.341108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.245 1.245 7 C -0.412 4.412 8 H 0.053 0.947 9 O -0.252 6.252 10 C 0.408 3.592 11 O -0.574 6.574 12 C -0.015 4.015 13 C -0.024 4.024 14 C -0.206 4.206 15 C -0.226 4.226 16 C -0.041 4.041 17 O -0.195 6.195 18 H 0.290 0.710 19 H 0.164 0.836 20 H 0.140 0.860 21 H 0.159 0.841 22 H 0.175 0.825 23 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.068 -4.031 -0.474 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.169 1.169 7 C -0.488 4.488 8 H 0.071 0.929 9 O -0.161 6.161 10 C 0.255 3.745 11 O -0.470 6.470 12 C -0.051 4.051 13 C -0.074 4.074 14 C -0.225 4.225 15 C -0.245 4.245 16 C -0.108 4.108 17 O -0.091 6.091 18 H 0.100 0.900 19 H 0.182 0.818 20 H 0.158 0.842 21 H 0.176 0.824 22 H 0.192 0.808 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.661 -4.072 -0.180 16.183 hybrid contribution -0.618 -0.012 -0.186 0.646 sum 15.043 -4.083 -0.366 15.592 Atomic orbital electron populations 1.69709 1.07775 1.30354 1.47994 1.25667 0.96029 1.02995 0.93936 0.85006 0.79083 0.75184 0.79974 1.18161 1.19178 1.16859 1.20304 0.77803 0.95717 1.54958 0.92919 1.83507 1.21902 1.32341 1.78397 1.24259 0.92773 0.81444 0.76026 1.90616 1.68614 1.37589 1.50166 1.19675 0.85493 0.90061 1.09895 1.21783 1.06107 0.94448 0.85023 1.21933 1.06047 0.94722 0.99792 1.22177 1.07936 0.98983 0.95370 1.24874 1.03152 0.85628 0.97105 1.83972 1.67313 1.22328 1.35525 0.90016 0.81823 0.84185 0.82366 0.80776 0.74252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.09 13.96 21.62 0.30 -55.79 14 2 C 0.01 0.79 5.49 84.88 0.47 1.25 14 3 Si 0.99 43.07 28.62 68.60 1.96 45.04 14 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 14 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 6 H -0.25 -10.06 7.11 99.48 0.71 -9.35 14 7 C -0.41 -25.71 10.10 67.94 0.69 -25.02 14 8 H 0.05 3.78 7.09 -2.91 -0.02 3.76 14 9 O -0.25 -13.38 8.58 14.91 0.13 -13.25 14 10 C 0.41 19.51 7.90 71.24 0.56 20.07 14 11 O -0.57 -32.76 15.27 20.77 0.32 -32.44 14 12 C -0.01 -0.46 6.35 29.10 0.18 -0.28 14 13 C -0.02 -0.79 5.81 24.83 0.14 -0.65 14 14 C -0.21 -6.16 10.81 22.19 0.24 -5.92 14 15 C -0.23 -5.69 10.91 22.19 0.24 -5.45 14 16 C -0.04 -1.01 12.09 66.97 0.81 -0.20 14 17 O -0.19 -6.36 10.65 -2.47 -0.03 -6.38 14 18 H 0.29 15.88 8.31 -92.70 -0.77 15.11 14 19 H 0.16 3.84 8.14 -2.38 -0.02 3.82 14 20 H 0.14 3.64 8.14 -2.39 -0.02 3.62 14 21 H 0.16 4.16 8.06 -2.91 -0.02 4.14 14 22 H 0.17 3.21 8.06 -2.91 -0.02 3.19 14 23 H 0.24 3.49 8.06 -2.91 -0.02 3.47 14 Total: -1.00 -78.53 223.71 7.24 -71.29 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.22 Total: 7.73 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 3.34 Total: -16.19 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.30 Total: -55.79 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: 0.42 Total: -52.08 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.96 Total: 45.04 kcal Total: -78.53 7.24 -71.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308085060.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.658 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds