Wall clock time and date at job start Sun Mar 29 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48498 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46761 * 299.99665 * 3 2 1 6 6 H 1.48494 * 109.47174 * 59.99355 * 3 2 1 7 7 C 1.37871 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47408 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00249 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.90654 * 23.74638 * 11 10 9 13 13 C 1.53961 * 113.66665 * 252.44907 * 11 10 9 14 14 C 1.53778 * 87.11135 * 220.10872 * 13 11 10 15 15 C 1.53781 * 113.61433 * 155.00090 * 11 10 9 16 16 H 1.08996 * 113.61186 * 25.34780 * 15 11 10 17 17 C 1.53006 * 113.61060 * 254.52889 * 15 11 10 18 18 C 1.53000 * 117.49776 * 61.53000 * 17 15 11 19 19 C 1.52997 * 117.49537 * 130.15454 * 17 15 11 20 20 H 0.97003 * 120.00561 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47248 * 59.99647 * 9 7 2 22 22 H 1.09007 * 109.47077 * 299.99292 * 9 7 2 23 23 H 1.00904 * 110.99784 * 303.95476 * 10 9 7 24 24 H 1.09005 * 113.66343 * 105.53713 * 13 11 10 25 25 H 1.09003 * 113.60932 * 334.67534 * 13 11 10 26 26 H 1.09002 * 113.61210 * 270.81497 * 14 13 11 27 27 H 1.09000 * 113.61555 * 139.90926 * 14 13 11 28 28 H 1.09002 * 115.56020 * 275.83583 * 17 15 11 29 29 H 1.08990 * 117.49990 * 359.97438 * 18 17 15 30 30 H 1.09004 * 117.49237 * 214.97568 * 18 17 15 31 31 H 1.08999 * 117.49685 * 145.02116 * 19 17 15 32 32 H 1.08999 * 117.52022 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.4952 -4.8420 -0.4029 13 6 1.5851 -5.6526 1.3458 14 6 1.7724 -6.9429 0.5305 15 6 2.3342 -6.0574 -0.5943 16 1 3.4107 -5.8993 -0.5290 17 6 1.8795 -6.4805 -1.9926 18 6 1.9557 -5.4348 -3.1068 19 6 2.9507 -6.5968 -3.0787 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8406 -3.5485 -0.7809 24 1 0.6564 -5.6271 1.9159 25 1 2.4561 -5.3833 1.9434 26 1 0.8351 -7.4356 0.2715 27 1 2.5071 -7.6260 0.9567 28 1 1.0523 -7.1897 -2.0235 29 1 2.3293 -4.4453 -2.8436 30 1 1.1785 -5.4560 -3.8708 31 1 2.8282 -7.3823 -3.8244 32 1 3.9794 -6.3715 -2.7976 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308096005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:35 Heat of formation + Delta-G solvation = 32.230682 kcal Electronic energy + Delta-G solvation = -12225.951638 eV Core-core repulsion = 10187.311348 eV Total energy + Delta-G solvation = -2038.640290 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21358 -35.86513 -33.78669 -31.72750 -26.65128 -25.84768 -23.44428 -22.14696 -21.51225 -20.33965 -19.05829 -16.42885 -15.64636 -15.08069 -14.62979 -14.25760 -13.55477 -13.10965 -12.71143 -12.16150 -11.84531 -11.51779 -11.33947 -11.15872 -11.04635 -10.78209 -10.55404 -10.44527 -10.26823 -9.93760 -9.68441 -9.32607 -9.00797 -8.46105 -7.22662 -6.00431 -4.02206 3.32297 3.39428 3.44675 3.93980 4.45523 4.76903 4.93694 5.00170 5.21391 5.29478 5.35277 5.39345 5.47181 5.63875 5.72461 5.79726 6.04935 6.08837 6.09802 6.22444 6.29490 6.40145 6.46200 6.73607 6.84947 7.35131 7.47923 7.83814 8.18622 8.46698 8.67938 9.07943 9.62745 11.10669 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.044332 B = 0.008289 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.442850 B = 3377.291280 C = 3705.583162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.678 5.678 11 C 0.073 3.927 12 H 0.063 0.937 13 C -0.129 4.129 14 C -0.134 4.134 15 C -0.086 4.086 16 H 0.092 0.908 17 C -0.141 4.141 18 C -0.177 4.177 19 C -0.184 4.184 20 H 0.260 0.740 21 H -0.014 1.014 22 H 0.027 0.973 23 H 0.327 0.673 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -12.344 -3.040 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.308 5.308 11 C -0.038 4.038 12 H 0.081 0.919 13 C -0.168 4.168 14 C -0.172 4.172 15 C -0.105 4.105 16 H 0.111 0.889 17 C -0.160 4.160 18 C -0.214 4.214 19 C -0.221 4.221 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.045 0.955 23 H 0.144 0.856 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.319 -12.190 -2.354 12.851 hybrid contribution -0.055 0.954 -0.956 1.352 sum 3.264 -11.236 -3.310 12.159 Atomic orbital electron populations 1.69974 1.06069 1.26593 1.51124 1.24993 0.94865 0.99341 0.95428 0.86452 0.80080 0.83454 0.77483 1.19678 1.21121 1.21007 1.21249 0.93511 0.90365 1.50021 0.92005 1.19587 0.90649 0.87467 0.95640 1.60806 1.20731 1.01084 1.48171 1.22997 0.96382 0.89196 0.95258 0.91884 1.23023 1.01888 0.94715 0.97158 1.22807 1.00496 0.96506 0.97345 1.22495 0.99916 0.97062 0.91014 0.88949 1.22338 1.00705 1.02189 0.90719 1.22924 1.02159 0.95144 1.01207 1.22976 0.95813 1.01213 1.02083 0.93021 0.99644 0.95513 0.85551 0.92289 0.89696 0.90688 0.91844 0.88237 0.88404 0.89202 0.89441 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.19 5.28 -4.98 -0.03 5.16 16 10 N -0.68 -14.83 6.55 -107.03 -0.70 -15.54 16 11 C 0.07 1.32 3.55 -66.81 -0.24 1.09 16 12 H 0.06 1.24 7.83 -51.93 -0.41 0.83 16 13 C -0.13 -2.09 7.89 -25.83 -0.20 -2.30 16 14 C -0.13 -1.78 7.64 -25.92 -0.20 -1.98 16 15 C -0.09 -1.26 3.44 -89.80 -0.31 -1.57 16 16 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 17 C -0.14 -1.90 5.53 -90.62 -0.50 -2.40 16 18 C -0.18 -2.49 10.08 -26.73 -0.27 -2.76 16 19 C -0.18 -2.23 10.22 -26.73 -0.27 -2.50 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.01 -0.40 8.13 -51.93 -0.42 -0.83 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.33 6.87 8.19 -39.29 -0.32 6.55 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 1.25 7.97 -51.93 -0.41 0.84 16 29 H 0.10 1.55 7.79 -51.93 -0.40 1.15 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -29.78 268.17 -8.69 -38.46 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.31 Total: 3.46 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -2.44 Total: -20.88 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.04 Total: -42.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.78 -8.69 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308096005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.695 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds