Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00702 * 2 1 4 4 N 1.46902 * 109.47704 * 124.99687 * 3 2 1 5 5 C 1.46895 * 111.00087 * 163.62130 * 4 3 2 6 6 C 1.53004 * 109.47087 * 189.99780 * 5 4 3 7 7 C 1.50692 * 109.47411 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99800 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00133 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00265 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99967 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46708 * 90.00111 * 11 9 7 13 13 H 1.48494 * 109.47081 * 209.99955 * 11 9 7 14 14 H 1.48500 * 109.47357 * 330.00211 * 11 9 7 15 15 C 1.46898 * 110.99693 * 287.57519 * 4 3 2 16 16 C 1.52998 * 117.49809 * 137.39466 * 15 4 3 17 17 C 1.53002 * 117.49918 * 68.73516 * 15 4 3 18 18 H 1.08002 * 119.99435 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.00446 * 180.02562 * 1 2 3 20 20 H 1.08002 * 119.99435 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.46847 * 4.99431 * 3 2 1 22 22 H 1.08997 * 109.47285 * 245.00274 * 3 2 1 23 23 H 1.09001 * 109.47634 * 70.00228 * 5 4 3 24 24 H 1.08999 * 109.47547 * 309.99798 * 5 4 3 25 25 H 1.08994 * 109.47318 * 300.00675 * 6 5 4 26 26 H 1.09011 * 109.46636 * 59.99952 * 6 5 4 27 27 H 0.96994 * 120.00377 * 180.02562 * 10 9 7 28 28 H 1.08999 * 115.55291 * 283.06152 * 15 4 3 29 29 H 1.08998 * 117.49901 * 359.97438 * 16 15 4 30 30 H 1.09001 * 117.50412 * 145.02077 * 16 15 4 31 31 H 1.09007 * 117.49963 * 214.97849 * 17 15 4 32 32 H 1.09000 * 117.49769 * 359.97296 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 7 2.9964 1.3319 1.1345 5 6 4.0075 2.3831 0.9599 6 6 5.0983 2.2228 2.0209 7 6 6.1358 3.3008 1.8414 8 1 6.0279 4.0279 1.0501 9 6 7.2230 3.3590 2.6875 10 7 7.3547 2.4734 3.6507 11 14 8.5088 4.6957 2.4654 12 1 8.1315 5.8843 3.2719 13 1 9.8305 4.1909 2.9163 14 1 8.5864 5.0748 1.0317 15 6 2.2765 1.4994 2.4040 16 6 2.7265 0.6435 3.5896 17 6 1.4050 0.3358 2.8809 18 1 -0.5399 0.9354 -0.0004 19 1 -0.5401 -0.9352 0.0004 20 1 1.8499 -0.9354 0.0004 21 1 1.3587 2.1316 0.0895 22 1 2.6213 1.4024 -0.9314 23 1 3.5375 3.3607 1.0670 24 1 4.4507 2.2998 -0.0323 25 1 4.6551 2.3061 3.0131 26 1 5.5683 1.2451 1.9138 27 1 8.1193 2.5145 4.2461 28 1 1.9273 2.5098 2.6166 29 1 3.5564 -0.0443 3.4275 30 1 2.6729 1.0905 4.5823 31 1 0.4826 0.5807 3.4076 32 1 1.3655 -0.5539 2.2524 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308123226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = 24.722416 kcal Electronic energy + Delta-G solvation = -12260.382367 eV Core-core repulsion = 10221.416495 eV Total energy + Delta-G solvation = -2038.965873 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71646 -35.82152 -35.42463 -33.99132 -31.03941 -27.04939 -25.32957 -23.17147 -23.01258 -21.09836 -20.59820 -18.49642 -17.06624 -16.48181 -16.37927 -15.80447 -15.41520 -14.53523 -14.39581 -14.13064 -13.74052 -13.10844 -12.86256 -12.71043 -12.48743 -12.32173 -12.10817 -11.89319 -11.45803 -11.32785 -11.12477 -10.88433 -10.51696 -10.04014 -9.21202 -8.18298 -6.29656 1.39686 1.41504 1.45764 1.52648 2.40954 2.96589 3.05129 3.14780 4.07363 4.09580 4.16518 4.20291 4.36768 4.49155 4.58621 4.70422 4.81836 4.83158 4.86248 5.10404 5.13258 5.18352 5.36669 5.49170 5.71294 5.78443 5.83785 5.89769 6.14450 6.32397 6.40234 6.88106 7.39065 8.93621 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060081 B = 0.008000 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.929018 B = 3499.204756 C = 3823.744375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.080 3.920 4 N -0.522 5.522 5 C 0.080 3.920 6 C 0.042 3.958 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.930 5.930 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.001 4.001 16 C -0.174 4.174 17 C -0.137 4.137 18 H 0.098 0.902 19 H 0.115 0.885 20 H 0.107 0.893 21 H 0.040 0.960 22 H 0.078 0.922 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.001 0.999 26 H -0.013 1.013 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -3.037 -4.716 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.164 4.164 3 C -0.047 4.047 4 N -0.246 5.246 5 C -0.047 4.047 6 C 0.005 3.995 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.110 4.110 16 C -0.212 4.212 17 C -0.174 4.174 18 H 0.116 0.884 19 H 0.133 0.867 20 H 0.125 0.875 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.019 0.981 26 H 0.006 0.994 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.389 -3.528 -4.585 13.673 hybrid contribution 0.718 1.365 0.173 1.552 sum -11.671 -2.164 -4.412 12.663 Atomic orbital electron populations 1.23910 0.95031 1.02606 1.00242 1.22736 0.96007 0.97516 1.00113 1.21256 0.94202 0.95801 0.93449 1.61785 1.13906 1.47675 1.01227 1.22010 0.92292 0.90738 0.99684 1.18842 0.92221 0.94767 0.93715 1.21662 1.07821 1.13982 1.15079 0.92378 1.25942 1.00383 0.98465 0.94772 1.70112 1.30865 1.37105 1.18918 0.85452 0.77896 0.78842 0.78863 1.19768 1.20691 1.18766 1.22266 1.02586 0.94824 0.91323 1.22903 0.98802 1.03467 0.96007 1.23183 0.93846 0.98600 1.01803 0.88413 0.86696 0.87546 0.94205 0.90361 0.96307 0.91844 0.98098 0.99446 0.92823 0.90888 0.90688 0.89028 0.86893 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 13.80 67.78 0.94 -2.56 16 2 C -0.15 -3.56 6.96 25.65 0.18 -3.38 16 3 C 0.08 2.36 5.42 85.55 0.46 2.82 16 4 N -0.52 -19.61 4.60 -875.54 -4.03 -23.63 16 5 C 0.08 3.53 4.89 86.31 0.42 3.95 16 6 C 0.04 2.31 4.80 29.85 0.14 2.45 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.00 0.14 5.46 84.66 0.46 0.60 16 10 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 11 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.00 -0.04 4.20 44.92 0.19 0.15 16 16 C -0.17 -6.19 9.36 30.62 0.29 -5.90 16 17 C -0.14 -3.80 9.10 30.62 0.28 -3.52 16 18 H 0.10 1.79 7.84 -2.91 -0.02 1.77 16 19 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 20 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 21 H 0.04 1.12 7.70 -2.38 -0.02 1.10 16 22 H 0.08 2.27 7.80 -2.39 -0.02 2.25 16 23 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 24 H 0.06 2.72 7.86 -2.39 -0.02 2.70 16 25 H 0.00 0.04 6.64 -2.39 -0.02 0.02 16 26 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 31 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.11 2.80 6.16 -2.39 -0.01 2.78 16 Total: -1.00 -64.73 266.83 2.93 -61.80 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.06 Total: 9.41 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.59 Total: -37.13 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.74 Total: -81.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.73 2.93 -61.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308123226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.523 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds