Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47120 * 2 1 4 4 C 1.53002 * 109.46755 * 119.99972 * 2 1 3 5 5 C 1.53001 * 117.51951 * 231.28087 * 4 2 1 6 6 C 1.52998 * 117.49985 * 299.91052 * 4 2 1 7 7 N 1.46494 * 109.46954 * 239.99939 * 2 1 3 8 8 C 1.36941 * 119.99931 * 116.89657 * 7 2 1 9 9 H 1.08002 * 120.00250 * 149.69018 * 8 7 2 10 10 C 1.38811 * 119.99859 * 329.67942 * 8 7 2 11 11 N 1.31618 * 120.00120 * 343.26057 * 10 8 7 12 12 Si 1.86803 * 119.99852 * 163.25304 * 10 8 7 13 13 H 1.48499 * 109.46855 * 60.00580 * 12 10 8 14 14 H 1.48497 * 109.46969 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47204 * 300.00453 * 12 10 8 16 16 C 1.46499 * 120.00395 * 296.89046 * 7 2 1 17 17 C 1.52998 * 117.50550 * 191.53433 * 16 7 2 18 18 C 1.52995 * 117.50011 * 122.90972 * 16 7 2 19 19 H 1.09004 * 109.47234 * 59.99773 * 1 2 3 20 20 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47421 * 300.00263 * 1 2 3 22 22 H 1.09004 * 115.54717 * 85.58064 * 4 2 1 23 23 H 1.08997 * 117.49908 * 214.97335 * 5 4 2 24 24 H 1.08998 * 117.49453 * 359.97438 * 5 4 2 25 25 H 1.09001 * 117.49816 * 359.97438 * 6 4 2 26 26 H 1.09003 * 117.49577 * 144.97212 * 6 4 2 27 27 H 0.96995 * 119.99969 * 185.04994 * 11 10 8 28 28 H 1.09008 * 115.54789 * 337.24368 * 16 7 2 29 29 H 1.09008 * 117.49147 * 0.02562 * 17 16 7 30 30 H 1.08997 * 117.50273 * 145.02022 * 17 16 7 31 31 H 1.09004 * 117.50375 * 214.98582 * 18 16 7 32 32 H 1.09002 * 117.50078 * 0.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.0757 0.0037 2.1109 6 6 1.6373 -0.1483 2.6096 7 7 2.0183 -0.6906 -1.1961 8 6 2.7523 -0.0080 -2.1292 9 1 3.4996 -0.5255 -2.7125 10 6 2.5358 1.3490 -2.3254 11 7 1.4335 1.9112 -1.8768 12 14 3.8090 2.3773 -3.2258 13 1 3.9970 1.8420 -4.5981 14 1 3.3436 3.7854 -3.3027 15 1 5.0989 2.3222 -2.4919 16 6 1.7215 -2.1115 -1.3942 17 6 2.4738 -2.8419 -2.5083 18 6 0.9904 -2.5082 -2.6782 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 2.1251 -1.8047 1.1647 23 1 3.8424 -0.6026 2.5932 24 1 3.3944 0.9947 1.7875 25 1 1.0095 0.7427 2.6146 26 1 1.4573 -0.8548 3.4199 27 1 1.2476 2.8419 -2.0770 28 1 1.4909 -2.6741 -0.4894 29 1 3.1900 -2.2652 -3.0938 30 1 2.7385 -3.8852 -2.3368 31 1 0.2791 -3.3320 -2.6185 32 1 0.7305 -1.7121 -3.3760 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308129246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = 56.256639 kcal Electronic energy + Delta-G solvation = -12914.143487 eV Core-core repulsion = 10876.545041 eV Total energy + Delta-G solvation = -2037.598446 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48848 -37.60509 -35.11460 -32.71451 -30.21679 -26.26111 -24.31661 -23.04889 -22.95318 -22.19491 -20.29806 -18.31866 -17.22934 -16.54318 -15.83495 -15.64432 -14.87447 -14.36179 -13.86059 -13.75456 -13.22350 -12.81153 -12.72612 -12.65471 -12.37484 -12.10234 -12.02524 -11.85870 -11.42972 -11.19483 -11.01590 -10.85074 -10.67862 -10.26137 -8.39259 -7.85595 -5.28453 1.44620 1.46978 1.52799 2.49454 3.07892 3.21018 3.47476 3.57425 4.06865 4.22620 4.33879 4.37099 4.55186 4.57085 4.81684 4.84388 4.87955 4.94647 5.00895 5.13171 5.16507 5.19786 5.35934 5.38355 5.43981 5.54610 5.73196 5.86176 5.99811 6.49648 7.23240 7.95910 8.41442 9.19797 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.017097 C = 0.012628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.005245 B = 1637.298754 C = 2216.680498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.219 3.781 3 H 0.061 0.939 4 C -0.168 4.168 5 C -0.182 4.182 6 C -0.164 4.164 7 N -0.564 5.564 8 C -0.262 4.262 9 H 0.062 0.938 10 C -0.039 4.039 11 N -0.919 5.919 12 Si 0.956 3.044 13 H -0.280 1.280 14 H -0.293 1.293 15 H -0.280 1.280 16 C 0.112 3.888 17 C -0.192 4.192 18 C -0.220 4.220 19 H 0.035 0.965 20 H 0.037 0.963 21 H 0.045 0.955 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.249 0.751 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -5.804 5.726 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H 0.079 0.921 4 C -0.188 4.188 5 C -0.219 4.219 6 C -0.201 4.201 7 N -0.281 5.281 8 C -0.392 4.392 9 H 0.079 0.921 10 C -0.236 4.236 11 N -0.564 5.564 12 Si 0.785 3.215 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.207 1.207 16 C 0.003 3.997 17 C -0.231 4.231 18 C -0.261 4.261 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.116 0.884 23 H 0.120 0.880 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.058 0.942 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.446 -5.568 5.784 8.041 hybrid contribution 0.474 0.903 -0.973 1.409 sum 0.920 -4.665 4.811 6.765 Atomic orbital electron populations 1.21889 0.97745 0.99025 0.99827 1.19755 0.91861 0.94911 0.82163 0.92063 1.22963 1.04088 0.99102 0.92639 1.22888 0.92996 1.01409 1.04648 1.22919 0.97093 1.03176 0.96953 1.43667 1.60001 1.04607 1.19786 1.19296 1.12343 0.91513 1.16095 0.92056 1.25710 0.97993 0.99259 1.00588 1.70094 1.24426 1.12546 1.49300 0.85516 0.79486 0.77766 0.78719 1.20618 1.21941 1.20667 1.21291 1.01077 0.86151 0.91192 1.23093 0.94509 1.00474 1.05014 1.23241 0.94664 1.02611 1.05536 0.94561 0.94433 0.93638 0.88431 0.87959 0.91124 0.89615 0.86978 0.94181 0.86990 0.90925 0.87298 0.88223 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.89 71.98 0.64 -4.92 16 2 C 0.22 10.14 2.00 44.99 0.09 10.23 16 3 H 0.06 3.32 5.70 -2.39 -0.01 3.30 16 4 C -0.17 -6.29 5.16 -10.79 -0.06 -6.35 16 5 C -0.18 -6.20 10.18 30.59 0.31 -5.89 16 6 C -0.16 -5.02 9.73 30.59 0.30 -4.72 16 7 N -0.56 -27.76 2.72 -654.27 -1.78 -29.54 16 8 C -0.26 -14.31 8.87 84.03 0.75 -13.56 16 9 H 0.06 3.35 6.10 -2.91 -0.02 3.33 16 10 C -0.04 -2.16 4.88 84.86 0.41 -1.75 16 11 N -0.92 -52.83 10.19 21.65 0.22 -52.61 16 12 Si 0.96 45.15 29.59 68.60 2.03 47.18 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C 0.11 4.66 5.50 44.99 0.25 4.90 16 17 C -0.19 -7.32 9.85 30.59 0.30 -7.02 16 18 C -0.22 -8.77 10.22 30.59 0.31 -8.46 16 19 H 0.04 1.84 7.22 -2.39 -0.02 1.82 16 20 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 21 H 0.04 1.79 7.29 -2.39 -0.02 1.77 16 22 H 0.10 3.48 6.64 -2.39 -0.02 3.46 16 23 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 24 H 0.07 2.66 8.05 -2.39 -0.02 2.64 16 25 H 0.09 2.70 7.61 -2.39 -0.02 2.68 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.25 14.05 8.32 -92.71 -0.77 13.28 16 28 H 0.11 4.12 6.82 -2.38 -0.02 4.10 16 29 H 0.07 3.09 6.22 -2.38 -0.01 3.07 16 30 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 32 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -59.16 257.55 4.86 -54.31 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.08 Total: 18.19 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.30 Total: -37.53 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.56 Total: -82.15 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -59.16 4.86 -54.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308129246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.565 kcal (2) G-P(sol) polarization free energy of solvation -59.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds