Wall clock time and date at job start Sun Mar 29 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 H 1.09005 * 109.47461 * 54.99413 * 3 2 1 5 5 N 1.46506 * 109.47005 * 294.99638 * 3 2 1 6 6 C 1.34777 * 119.99934 * 84.99402 * 5 3 2 7 7 O 1.21691 * 119.99816 * 0.02562 * 6 5 3 8 8 C 1.46374 * 119.99891 * 180.02562 * 6 5 3 9 9 H 1.08002 * 120.00306 * 353.95494 * 8 6 5 10 10 C 1.40051 * 119.99853 * 173.95546 * 8 6 5 11 11 N 1.30669 * 120.00034 * 6.15406 * 10 8 6 12 12 Si 1.86797 * 119.99717 * 186.15460 * 10 8 6 13 13 H 1.48506 * 109.47028 * 94.98570 * 12 10 8 14 14 H 1.48505 * 109.47314 * 214.98200 * 12 10 8 15 15 H 1.48498 * 109.47368 * 334.98359 * 12 10 8 16 16 C 1.52997 * 109.47464 * 174.99746 * 3 2 1 17 17 C 1.53002 * 117.49881 * 248.74463 * 16 3 2 18 18 C 1.52999 * 117.50226 * 180.08365 * 16 3 2 19 19 H 1.08998 * 109.47447 * 300.00745 * 1 2 3 20 20 H 1.09003 * 109.46903 * 60.00526 * 1 2 3 21 21 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47447 * 239.99255 * 2 1 3 23 23 H 1.09003 * 109.46903 * 119.99474 * 2 1 3 24 24 H 0.96999 * 119.99730 * 265.00668 * 5 3 2 25 25 H 0.97004 * 119.99882 * 180.02562 * 11 10 8 26 26 H 1.09003 * 115.54855 * 34.41724 * 16 3 2 27 27 H 1.08998 * 117.49690 * 359.97438 * 17 16 3 28 28 H 1.08997 * 117.49735 * 145.02117 * 17 16 3 29 29 H 1.09003 * 117.50147 * 214.97917 * 18 16 3 30 30 H 1.09006 * 117.49497 * 359.97438 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3672 7 8 -0.3419 2.6324 -0.4312 8 6 0.0479 3.3182 -2.6181 9 1 0.7694 3.4328 -3.4135 10 6 -1.2585 3.7951 -2.7836 11 7 -2.0966 3.7658 -1.7816 12 14 -1.8026 4.4732 -4.4369 13 1 -2.4738 3.4011 -5.2150 14 1 -2.7498 5.5969 -4.2236 15 1 -0.6171 4.9607 -5.1866 16 6 3.5648 1.4443 0.1258 17 6 4.1655 1.9737 1.4296 18 6 4.2704 2.8018 0.1464 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.2721 2.1229 -1.9978 25 1 -3.0015 4.0958 -1.8964 26 1 4.0781 0.6178 -0.3657 27 1 3.4743 2.3211 2.1975 28 1 5.0741 1.4958 1.7956 29 1 5.2480 2.8682 -0.3312 30 1 3.6482 3.6935 0.0699 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323905689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:52 Heat of formation + Delta-G solvation = -51.486633 kcal Electronic energy + Delta-G solvation = -12772.895387 eV Core-core repulsion = 10567.480269 eV Total energy + Delta-G solvation = -2205.415118 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10019 -38.01939 -35.22613 -34.36318 -32.74533 -28.75729 -27.11904 -23.31625 -22.68214 -21.91302 -20.99949 -19.03523 -17.39687 -17.04383 -16.07391 -15.86595 -15.40583 -15.05996 -14.44738 -13.78862 -13.52814 -13.12914 -13.03143 -12.71151 -12.56705 -12.39229 -12.30584 -12.03459 -11.77020 -11.62859 -11.21606 -10.98376 -10.88138 -9.68477 -9.25807 -8.24399 -6.78567 1.39613 1.40593 1.55710 2.25508 2.54111 2.78993 3.42246 3.68369 3.70964 4.06614 4.22123 4.29147 4.38959 4.46579 4.62725 4.81173 4.95448 5.01381 5.05960 5.11316 5.26245 5.31147 5.35755 5.45985 5.62851 5.96997 6.31792 6.43786 6.92485 7.67576 8.57880 8.76250 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.010110 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.713186 B = 2768.964459 C = 3089.886833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.180 3.820 4 H 0.035 0.965 5 N -0.746 5.746 6 C 0.545 3.455 7 O -0.617 6.617 8 C -0.578 4.578 9 H 0.081 0.919 10 C 0.031 3.969 11 N -0.820 5.820 12 Si 0.992 3.008 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.250 1.250 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.175 4.175 19 H 0.027 0.973 20 H 0.029 0.971 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.391 0.609 25 H 0.272 0.728 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 -4.485 0.041 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.075 3.925 4 H 0.053 0.947 5 N -0.400 5.400 6 C 0.348 3.652 7 O -0.504 6.504 8 C -0.615 4.615 9 H 0.099 0.901 10 C -0.184 4.184 11 N -0.450 5.450 12 Si 0.812 3.188 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.174 1.174 16 C -0.180 4.180 17 C -0.200 4.200 18 C -0.213 4.213 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.224 0.776 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.015 -4.473 0.815 10.999 hybrid contribution -0.489 0.486 -0.785 1.045 sum 9.526 -3.987 0.030 10.327 Atomic orbital electron populations 1.21640 0.97238 0.99251 1.00901 1.21846 0.94808 0.96477 1.02393 1.20239 0.92115 0.92608 0.87586 0.94712 1.45860 1.17231 1.61482 1.15387 1.18387 0.80174 0.78077 0.88572 1.90564 1.52788 1.64676 1.42357 1.21433 0.98122 1.40843 1.01113 0.90110 1.26865 0.96156 0.93678 1.01669 1.70189 1.05538 1.36062 1.33229 0.85099 0.78852 0.78104 0.76790 1.18961 1.19885 1.17358 1.22515 0.92902 0.99048 1.03582 1.23049 1.03130 1.03331 0.90474 1.22882 1.02093 0.94062 1.02223 0.95373 0.95221 0.92747 0.91242 0.89859 0.77636 0.91848 0.85405 0.90162 0.85843 0.86505 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.51 71.98 0.61 -5.16 16 2 C -0.12 -4.10 5.59 30.59 0.17 -3.93 16 3 C 0.18 6.93 2.45 44.99 0.11 7.04 16 4 H 0.03 1.61 7.33 -2.38 -0.02 1.59 16 5 N -0.75 -33.50 4.91 -446.81 -2.19 -35.69 16 6 C 0.54 31.34 6.31 86.36 0.54 31.89 16 7 O -0.62 -40.39 12.18 -4.32 -0.05 -40.44 16 8 C -0.58 -33.14 9.53 24.83 0.24 -32.90 16 9 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 10 C 0.03 1.76 5.49 85.31 0.47 2.23 16 11 N -0.82 -50.66 11.85 21.84 0.26 -50.40 16 12 Si 0.99 41.78 29.56 68.60 2.03 43.81 16 13 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 16 C -0.16 -4.53 5.22 -10.79 -0.06 -4.58 16 17 C -0.16 -3.95 10.18 30.62 0.31 -3.64 16 18 C -0.18 -4.71 10.13 30.62 0.31 -4.40 16 19 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 20 H 0.03 1.54 5.65 -2.39 -0.01 1.53 16 21 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.39 15.50 8.58 -92.71 -0.80 14.71 16 25 H 0.27 15.27 8.29 -92.71 -0.77 14.51 16 26 H 0.13 2.94 8.11 -2.39 -0.02 2.92 16 27 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -72.49 253.80 3.08 -69.41 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.33 Total: 26.77 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 2.71 Total: -13.45 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.93 Total: -86.09 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.05 Total: -40.44 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -72.49 3.08 -69.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323905689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.920 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds