Wall clock time and date at job start Sun Mar 29 2020 21:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51434 * 121.11079 * 2 1 4 4 C 1.53299 * 108.24157 * 229.00312 * 3 2 1 5 5 N 1.46832 * 109.39938 * 306.20866 * 4 3 2 6 6 C 1.46896 * 111.00056 * 189.74890 * 5 4 3 7 7 C 1.52996 * 109.47256 * 169.99997 * 6 5 4 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.46825 * 111.56480 * 65.38809 * 5 4 3 17 17 C 1.51439 * 121.10830 * 179.97438 * 2 1 3 18 18 H 1.07997 * 119.99763 * 0.02562 * 1 2 3 19 19 H 1.08001 * 120.00137 * 179.97438 * 1 2 3 20 20 H 1.09010 * 109.70544 * 109.31941 * 3 2 1 21 21 H 1.08990 * 109.71417 * 348.69339 * 3 2 1 22 22 H 1.09003 * 109.48574 * 186.23478 * 4 3 2 23 23 H 1.08993 * 109.48451 * 66.18417 * 4 3 2 24 24 H 1.09004 * 109.46774 * 50.00196 * 6 5 4 25 25 H 1.09000 * 109.47723 * 290.00584 * 6 5 4 26 26 H 1.09004 * 109.47066 * 60.00378 * 7 6 5 27 27 H 1.08994 * 109.47405 * 300.00209 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.09007 * 109.48601 * 54.58969 * 16 5 4 30 30 H 1.09003 * 109.48626 * 174.63287 * 16 5 4 31 31 H 1.08995 * 109.70920 * 250.68349 * 17 2 1 32 32 H 1.09001 * 109.70665 * 11.30929 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0925 1.2965 0.0000 4 6 3.1582 1.2139 -1.0989 5 7 3.9617 -0.0003 -0.9087 6 6 5.1331 -0.0006 -1.7950 7 6 6.0715 -1.1425 -1.3997 8 6 7.2736 -1.1423 -2.3087 9 1 7.3598 -0.4016 -3.0899 10 6 8.2663 -2.0841 -2.1389 11 7 8.1614 -2.9858 -1.1874 12 14 9.7599 -2.0791 -3.2607 13 1 9.6384 -0.9712 -4.2419 14 1 10.9884 -1.8879 -2.4484 15 1 9.8408 -3.3741 -3.9831 16 6 3.1581 -1.2144 -1.0984 17 6 2.0925 -1.2966 0.0006 18 1 -0.5399 0.9353 -0.0004 19 1 -0.5400 -0.9353 -0.0004 20 1 2.5731 1.4358 0.9685 21 1 1.4211 2.1312 -0.2012 22 1 3.8048 2.0898 -1.0450 23 1 2.6728 1.1794 -2.0742 24 1 5.6586 0.9500 -1.7029 25 1 4.8084 -0.1376 -2.8265 26 1 5.5460 -2.0930 -1.4919 27 1 6.3963 -1.0054 -0.3684 28 1 8.8597 -3.6486 -1.0682 29 1 2.6727 -1.1804 -2.0738 30 1 3.8045 -2.0904 -1.0441 31 1 2.5730 -1.4355 0.9690 32 1 1.4208 -2.1313 -0.2003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334353949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:31 Heat of formation + Delta-G solvation = -14.379151 kcal Electronic energy + Delta-G solvation = -12235.290341 eV Core-core repulsion = 10194.628897 eV Total energy + Delta-G solvation = -2040.661444 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93813 -36.29574 -34.78783 -32.16426 -31.63504 -28.63845 -25.93690 -24.48713 -22.93647 -21.67981 -19.21319 -18.52447 -16.57041 -16.46258 -16.10707 -15.68129 -15.29440 -15.00911 -14.39872 -14.12009 -13.74380 -13.30008 -13.20631 -12.92352 -12.72395 -12.41347 -12.19683 -11.84763 -11.73611 -11.45551 -11.18380 -11.12668 -10.53964 -9.94848 -9.15253 -8.20646 -6.32083 1.39229 1.40231 1.40739 1.54144 2.40151 3.07365 3.12787 3.80834 3.86753 4.22218 4.31068 4.34162 4.47181 4.53505 4.64184 4.67534 4.86048 4.91536 4.95883 5.06457 5.07776 5.11199 5.21847 5.44872 5.65852 5.75618 5.77089 5.98176 6.13154 6.34139 6.34784 6.85175 7.37107 8.91883 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.081286 B = 0.007096 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.382120 B = 3944.705855 C = 4151.133700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.076 4.076 4 C 0.056 3.944 5 N -0.554 5.554 6 C 0.079 3.921 7 C 0.035 3.965 8 C -0.545 4.545 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.058 3.942 17 C -0.078 4.078 18 H 0.113 0.887 19 H 0.105 0.895 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.017 0.983 26 H -0.005 1.005 27 H -0.008 1.008 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 6.675 0.738 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.135 4.135 3 C -0.114 4.114 4 C -0.072 4.072 5 N -0.279 5.279 6 C -0.048 4.048 7 C -0.002 4.002 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.070 4.070 17 C -0.116 4.116 18 H 0.131 0.869 19 H 0.123 0.877 20 H 0.093 0.907 21 H 0.112 0.888 22 H 0.098 0.902 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.686 6.548 1.284 14.334 hybrid contribution 0.765 -0.434 -1.181 1.473 sum -11.921 6.114 0.103 13.398 Atomic orbital electron populations 1.23756 0.94165 1.02868 1.01779 1.22076 0.95493 0.95699 1.00280 1.20880 0.96275 0.95275 0.98949 1.22175 0.95118 0.92491 0.97368 1.61773 1.08470 1.02724 1.54890 1.21960 0.90555 0.99730 0.92540 1.18949 0.93135 0.92896 0.95251 1.21662 1.05645 1.14612 1.16403 0.92205 1.25978 1.01748 0.94921 0.97041 1.70122 1.35353 1.18092 1.33677 0.85357 0.78476 0.78304 0.78633 1.18565 1.20275 1.20296 1.22083 0.94648 0.93115 0.97111 1.20858 0.96155 0.95935 0.98623 0.86869 0.87680 0.90716 0.88751 0.90248 0.95197 0.91662 0.96459 0.98646 0.98957 0.92726 0.95427 0.92351 0.91209 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.78 14.01 67.78 0.95 -2.83 16 2 C -0.14 -3.38 5.41 -16.02 -0.09 -3.47 16 3 C -0.08 -1.87 6.21 30.18 0.19 -1.68 16 4 C 0.06 1.67 5.51 86.42 0.48 2.15 16 5 N -0.55 -21.07 4.58 -895.39 -4.10 -25.17 16 6 C 0.08 3.52 4.90 86.30 0.42 3.94 16 7 C 0.04 1.93 4.90 29.85 0.15 2.08 16 8 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 9 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 10 C 0.00 0.06 5.46 84.66 0.46 0.52 16 11 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 12 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 C 0.06 2.10 5.37 86.42 0.46 2.57 16 17 C -0.08 -2.26 6.21 30.18 0.19 -2.07 16 18 H 0.11 1.84 7.95 -2.91 -0.02 1.82 16 19 H 0.10 1.89 7.95 -2.91 -0.02 1.86 16 20 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 21 H 0.09 1.78 7.93 -2.39 -0.02 1.76 16 22 H 0.08 2.23 7.94 -2.39 -0.02 2.21 16 23 H 0.03 0.87 8.10 -2.39 -0.02 0.85 16 24 H 0.06 2.79 7.93 -2.38 -0.02 2.77 16 25 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 26 H 0.00 -0.28 6.35 -2.38 -0.02 -0.29 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 28 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.03 0.96 8.10 -2.38 -0.02 0.94 16 30 H 0.06 2.43 6.06 -2.39 -0.01 2.42 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 Total: -1.00 -64.76 260.64 2.71 -62.05 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.06 Total: 4.14 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.44 Total: -30.34 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.81 Total: -82.66 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.76 2.71 -62.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334353949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.671 kcal (2) G-P(sol) polarization free energy of solvation -64.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds