Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48496 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46689 * 300.00078 * 3 2 1 6 6 H 1.48497 * 109.46761 * 59.99887 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.47015 * 125.64976 * 359.69487 * 13 11 10 15 15 C 1.54318 * 107.27876 * 180.96785 * 14 13 11 16 16 C 1.55160 * 102.86085 * 22.52445 * 15 14 13 17 17 C 1.47427 * 125.64593 * 180.02562 * 13 11 10 18 18 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 20 20 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 21 21 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 22 22 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 23 23 H 1.09008 * 109.88346 * 300.51450 * 14 13 11 24 24 H 1.09000 * 109.88326 * 61.67756 * 14 13 11 25 25 H 1.08995 * 110.92550 * 264.11299 * 15 14 13 26 26 H 1.08998 * 110.59238 * 140.78196 * 15 14 13 27 27 H 1.08998 * 111.00585 * 206.22911 * 16 15 14 28 28 H 1.09003 * 111.00094 * 82.37699 * 16 15 14 29 29 H 1.09001 * 110.36461 * 274.67480 * 17 13 11 30 30 H 1.08995 * 110.37080 * 36.88626 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6282 -6.2793 -0.0044 15 6 3.9391 -7.7907 -0.0259 16 6 2.6384 -8.4026 -0.6100 17 6 1.5572 -7.4776 0.0019 18 1 -0.4850 0.8401 -0.0004 19 1 0.6245 -2.5571 -0.8897 20 1 0.6239 -2.5567 0.8904 21 1 2.8716 -3.6044 0.8905 22 1 2.8717 -3.6045 -0.8894 23 1 4.0444 -5.8007 -0.8910 24 1 4.0491 -5.8290 0.8946 25 1 4.1228 -8.1647 0.9812 26 1 4.7888 -7.9981 -0.6764 27 1 2.5066 -9.4318 -0.2763 28 1 2.6329 -8.3426 -1.6984 29 1 1.3245 -7.7885 1.0204 30 1 0.6565 -7.4863 -0.6118 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334535342.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -51.881706 kcal Electronic energy + Delta-G solvation = -12329.446906 eV Core-core repulsion = 10124.014656 eV Total energy + Delta-G solvation = -2205.432250 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56219 -37.04229 -33.44064 -31.68762 -30.63634 -28.93634 -25.77795 -23.37345 -21.45506 -20.82941 -18.59957 -16.94253 -16.40922 -15.79124 -14.83837 -14.41956 -14.17550 -13.48412 -13.34308 -12.81453 -12.37470 -12.10008 -11.86097 -11.43941 -11.25581 -11.06723 -10.93714 -10.83777 -10.55601 -9.92270 -9.62618 -9.14209 -8.97684 -8.35572 -8.28482 -5.94053 -3.98309 3.27550 3.34027 3.36321 3.41433 3.44970 4.46676 4.50959 4.57961 4.81789 5.24520 5.33030 5.40884 5.46805 5.61372 5.66531 5.76480 5.87584 5.94212 6.07263 6.27101 6.28525 6.61480 6.93185 7.77234 7.89242 7.91538 8.09877 8.41130 8.79178 9.10471 9.65065 11.17100 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073621 B = 0.007044 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.233772 B = 3973.987603 C = 4298.252291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.525 3.475 12 O -0.535 6.535 13 N -0.632 5.632 14 C 0.102 3.898 15 C -0.132 4.132 16 C -0.134 4.134 17 C 0.103 3.897 18 H 0.260 0.740 19 H 0.023 0.977 20 H 0.024 0.976 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -14.939 -0.352 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.316 3.684 12 O -0.410 6.410 13 N -0.370 5.370 14 C -0.021 4.021 15 C -0.170 4.170 16 C -0.172 4.172 17 C -0.020 4.020 18 H 0.070 0.930 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.992 -14.715 -0.346 16.749 hybrid contribution 0.524 0.882 0.021 1.026 sum 8.516 -13.833 -0.325 16.247 Atomic orbital electron populations 1.70012 1.06074 1.26454 1.50344 1.25034 0.94824 0.99242 0.95331 0.86527 0.79995 0.83820 0.77581 1.19751 1.21008 1.21012 1.21261 0.92958 0.90986 1.51193 0.92554 1.18924 0.93225 0.89412 0.98637 1.21845 1.00600 0.91614 1.02311 1.21329 0.88127 0.84545 0.74424 1.90668 1.14301 1.87007 1.49035 1.48771 1.06811 1.05676 1.75759 1.21960 0.81544 0.96629 1.02002 1.22636 0.98090 0.94419 1.01827 1.22778 0.94651 0.98850 1.00908 1.22127 0.96897 0.82454 1.00548 0.93009 0.95816 0.95803 0.90365 0.90361 0.91377 0.91419 0.90683 0.90205 0.90175 0.90720 0.92051 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.12 -2.67 4.83 -27.88 -0.13 -2.80 16 11 C 0.52 11.02 7.85 -10.98 -0.09 10.94 16 12 O -0.53 -13.49 16.24 5.56 0.09 -13.40 16 13 N -0.63 -10.15 3.33 -170.54 -0.57 -10.71 16 14 C 0.10 1.21 6.48 -3.07 -0.02 1.19 16 15 C -0.13 -1.13 6.95 -24.90 -0.17 -1.31 16 16 C -0.13 -1.24 7.08 -24.59 -0.17 -1.41 16 17 C 0.10 1.36 6.91 -2.54 -0.02 1.34 16 18 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 19 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 20 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 21 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 22 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 23 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.08 8.03 -51.93 -0.42 0.67 16 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -34.39 256.20 -6.64 -41.03 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.60 Total: -5.38 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.14 Total: -5.14 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.17 Total: -37.88 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.39 -6.64 -41.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334535342.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.848 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds