Wall clock time and date at job start Sun Mar 29 2020 22:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.52997 * 109.47250 * 119.99833 * 2 1 3 5 5 H 1.09001 * 115.56734 * 274.31235 * 4 2 1 6 6 C 1.53001 * 117.49637 * 128.61886 * 4 2 1 7 7 C 1.52995 * 60.00048 * 252.51436 * 6 4 2 8 8 H 1.09003 * 117.49935 * 107.51861 * 7 6 4 9 9 N 1.46504 * 117.49537 * 252.51054 * 7 6 4 10 10 C 1.34777 * 119.99854 * 223.60703 * 9 7 6 11 11 O 1.21693 * 120.00018 * 0.02562 * 10 9 7 12 12 C 1.46374 * 120.00143 * 179.97438 * 10 9 7 13 13 H 1.08001 * 119.99606 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00083 * 180.02562 * 12 10 9 15 15 N 1.30674 * 120.00155 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00031 * 180.27793 * 14 12 10 17 17 H 1.48497 * 109.47322 * 179.72813 * 16 14 12 18 18 H 1.48498 * 109.47165 * 299.72761 * 16 14 12 19 19 H 1.48501 * 109.47099 * 59.72586 * 16 14 12 20 20 H 1.08999 * 109.47083 * 59.99693 * 1 2 3 21 21 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47047 * 299.99857 * 1 2 3 23 23 H 1.08999 * 109.46724 * 240.00425 * 2 1 3 24 24 H 1.09002 * 109.47161 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47443 * 300.00087 * 3 2 1 26 26 H 1.09001 * 109.47575 * 60.00094 * 3 2 1 27 27 H 1.09008 * 117.49658 * 145.01838 * 6 4 2 28 28 H 1.09003 * 117.51793 * 0.02562 * 6 4 2 29 29 H 0.97000 * 120.00410 * 43.61429 * 9 7 6 30 30 H 0.97005 * 120.00029 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 2.1272 -0.1061 2.1449 6 6 3.0742 -1.8313 1.0513 7 6 1.6358 -2.1852 1.4342 8 1 1.0066 -2.6349 0.6661 9 7 1.3955 -2.6529 2.8016 10 6 0.5847 -3.7071 3.0205 11 8 0.0527 -4.2706 2.0823 12 6 0.3450 -4.1748 4.3866 13 1 0.8175 -3.6749 5.2192 14 6 -0.4971 -5.2706 4.6140 15 7 -1.0684 -5.8757 3.6065 16 14 -0.8092 -5.8626 6.3580 17 1 -1.7340 -7.0241 6.3284 18 1 0.4764 -6.2694 6.9802 19 1 -1.4179 -4.7652 7.1519 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 3.8417 -1.9465 1.8167 28 1 3.3917 -2.0478 0.0312 29 1 1.8197 -2.2039 3.5495 30 1 -1.6513 -6.6349 3.7640 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334566533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:50 Heat of formation + Delta-G solvation = -36.652961 kcal Electronic energy + Delta-G solvation = -12329.426525 eV Core-core repulsion = 10124.654643 eV Total energy + Delta-G solvation = -2204.771882 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.41177 -36.47446 -33.53152 -32.42808 -30.70078 -26.97149 -26.24150 -22.65509 -21.62210 -19.60153 -19.43428 -17.12804 -15.48935 -15.24333 -14.61017 -14.07660 -13.68237 -12.93127 -12.67781 -12.57928 -12.14133 -12.02362 -11.92803 -11.14356 -11.06780 -11.02863 -10.77366 -10.49895 -10.42991 -10.26615 -10.05123 -9.48990 -8.83653 -7.63290 -7.31642 -6.19364 -4.65316 3.15956 3.20695 3.22713 4.09192 4.27495 4.62631 4.64607 5.11164 5.17692 5.35489 5.49479 5.58551 5.77694 5.82855 5.87499 5.96462 6.03262 6.09872 6.16624 6.24317 6.41675 6.56562 6.62820 6.73683 7.42523 7.90938 8.10789 8.32824 9.01257 9.51940 10.59190 10.77249 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066717 B = 0.007407 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.584320 B = 3779.108448 C = 3850.013527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.172 4.172 5 H 0.097 0.903 6 C -0.207 4.207 7 C 0.120 3.880 8 H 0.125 0.875 9 N -0.736 5.736 10 C 0.556 3.444 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.268 1.268 19 H -0.268 1.268 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.381 0.619 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 9.757 -2.837 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.199 4.199 4 C -0.193 4.193 5 H 0.116 0.884 6 C -0.247 4.247 7 C 0.012 3.988 8 H 0.143 0.857 9 N -0.387 5.387 10 C 0.361 3.639 11 O -0.462 6.462 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.193 1.193 19 H -0.193 1.193 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.213 0.787 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.276 9.149 -3.575 10.713 hybrid contribution 0.220 0.010 1.272 1.290 sum 4.496 9.159 -2.304 10.460 Atomic orbital electron populations 1.21814 0.95009 1.02520 1.00968 1.20630 0.95705 0.95371 0.96300 1.21798 1.00734 0.96066 1.01275 1.22835 1.04891 0.92318 0.99209 0.88449 1.23549 0.94761 1.04360 1.02010 1.21304 0.95050 0.93223 0.89260 0.85695 1.45679 1.53086 1.35850 1.04111 1.18239 0.77334 0.77789 0.90576 1.90590 1.52637 1.57860 1.45111 1.20844 1.30476 1.15586 0.91331 0.91439 1.25707 0.94016 0.95437 0.98062 1.70012 1.21891 1.16263 1.31428 0.86415 0.78777 0.78561 0.82880 1.20516 1.19280 1.19267 0.93326 0.91981 0.92777 0.91483 0.92901 0.93102 0.92857 0.89421 0.89271 0.78726 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.03 37.16 0.34 -1.73 16 2 C -0.06 -0.83 3.07 -90.62 -0.28 -1.11 16 3 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 4 C -0.17 -2.68 5.07 -90.62 -0.46 -3.14 16 5 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 6 C -0.21 -3.34 10.10 -26.73 -0.27 -3.61 16 7 C 0.12 2.40 5.64 -67.93 -0.38 2.02 16 8 H 0.13 2.79 6.86 -51.93 -0.36 2.44 16 9 N -0.74 -16.96 5.56 -55.21 -0.31 -17.27 16 10 C 0.56 16.07 7.75 -12.99 -0.10 15.97 16 11 O -0.58 -18.94 14.59 5.20 0.08 -18.87 16 12 C -0.55 -15.57 9.54 -35.63 -0.34 -15.91 16 13 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 15 N -0.77 -23.18 11.83 55.55 0.66 -22.52 16 16 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 1.02 7.29 -51.93 -0.38 0.64 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 28 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 29 H 0.38 7.77 8.81 -40.82 -0.36 7.41 16 30 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -32.89 259.75 -6.36 -39.25 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.43 Total: 6.67 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.25 Total: -6.39 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.35 Total: -39.78 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.08 Total: -18.87 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.89 -6.36 -39.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334566533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.599 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds