Wall clock time and date at job start Sun Mar 29 2020 21:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29824 * 118.35770 * 2 1 4 4 C 1.50303 * 122.89556 * 180.34861 * 3 2 1 5 5 C 1.53087 * 109.71488 * 343.50485 * 4 3 2 6 6 N 1.47236 * 108.47456 * 48.95737 * 5 4 3 7 7 C 1.46907 * 111.00073 * 167.80814 * 6 5 4 8 8 C 1.52997 * 109.47135 * 188.97853 * 7 6 5 9 9 C 1.50700 * 109.47074 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00156 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99838 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00241 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47006 * 59.99602 * 13 11 9 15 15 H 1.48498 * 109.47265 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46801 * 299.99933 * 13 11 9 17 17 C 1.46834 * 110.20798 * 291.19785 * 6 5 4 18 18 H 1.09000 * 109.47251 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46895 * 119.99935 * 1 2 3 20 20 H 1.08998 * 109.47534 * 240.00848 * 1 2 3 21 21 H 1.08006 * 118.55312 * 0.06449 * 3 2 1 22 22 H 1.09005 * 109.43619 * 103.57376 * 4 3 2 23 23 H 1.09001 * 109.43345 * 223.42680 * 4 3 2 24 24 H 1.09001 * 109.63265 * 289.26340 * 5 4 3 25 25 H 1.08996 * 109.63862 * 168.65905 * 5 4 3 26 26 H 1.09002 * 109.47081 * 308.98221 * 7 6 5 27 27 H 1.09001 * 109.46922 * 68.97556 * 7 6 5 28 28 H 1.09002 * 109.47436 * 300.00150 * 8 7 6 29 29 H 1.09004 * 109.46994 * 60.00627 * 8 7 6 30 30 H 0.96997 * 119.99741 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.34026 * 290.68351 * 17 6 5 32 32 H 1.09001 * 109.34024 * 171.17365 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6219 1.2614 -0.0077 5 6 4.2482 -0.0764 0.3943 6 7 3.6208 -1.1436 -0.4028 7 6 4.3681 -2.4022 -0.2785 8 6 3.8256 -3.4190 -1.2848 9 6 4.5927 -4.7099 -1.1577 10 1 5.3874 -4.7966 -0.4315 11 6 4.2800 -5.7803 -1.9685 12 7 3.3120 -5.6749 -2.8525 13 14 5.2303 -7.3808 -1.8105 14 1 5.0738 -7.9156 -0.4340 15 1 4.7039 -8.3676 -2.7873 16 1 6.6685 -7.1315 -2.0841 17 6 2.2202 -1.3212 0.0006 18 1 -0.3634 1.0276 -0.0005 19 1 -0.3633 -0.5138 -0.8900 20 1 -0.3634 -0.5137 0.8900 21 1 1.5339 2.0473 0.0011 22 1 3.9590 1.5335 -1.0079 23 1 3.9281 2.0322 0.6995 24 1 4.0722 -0.2594 1.4543 25 1 5.3198 -0.0533 0.1966 26 1 5.4237 -2.2194 -0.4798 27 1 4.2536 -2.7945 0.7320 28 1 2.7700 -3.6018 -1.0835 29 1 3.9402 -3.0267 -2.2954 30 1 3.0917 -6.4281 -3.4227 31 1 2.1846 -1.7500 1.0021 32 1 1.7267 -1.9980 -0.6969 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335023123.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:26 Heat of formation + Delta-G solvation = 2.042437 kcal Electronic energy + Delta-G solvation = -12233.724970 eV Core-core repulsion = 10193.775620 eV Total energy + Delta-G solvation = -2039.949350 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.76399 -34.60684 -32.83869 -31.61058 -29.10608 -26.67560 -25.12820 -23.37291 -21.65972 -20.07797 -17.24774 -16.43136 -15.33209 -14.78889 -14.51992 -14.13051 -13.66760 -13.25197 -12.90567 -12.54377 -12.17330 -11.98699 -11.67659 -11.59992 -11.11866 -10.88729 -10.81268 -10.48542 -10.20817 -9.80914 -9.30429 -9.11129 -8.49759 -8.30306 -7.68800 -5.97359 -3.99929 2.48311 3.34781 3.39039 3.41424 4.40320 4.58173 4.96169 5.13754 5.38245 5.41722 5.57061 5.67058 5.71258 5.80706 5.85215 6.00372 6.09885 6.14669 6.27962 6.29292 6.43547 6.51497 6.76482 6.98661 7.23160 7.57961 7.61179 7.81680 7.92182 8.11248 8.45849 9.07146 9.63505 11.14000 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057752 B = 0.007717 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.711474 B = 3627.700478 C = 3959.444600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.121 4.121 3 C -0.164 4.164 4 C -0.081 4.081 5 C 0.049 3.951 6 N -0.533 5.533 7 C 0.061 3.939 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.089 3.911 18 H 0.057 0.943 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.099 0.901 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.016 0.984 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.039 0.961 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 11.233 6.127 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.182 4.182 4 C -0.119 4.119 5 C -0.080 4.080 6 N -0.257 5.257 7 C -0.065 4.065 8 C -0.009 4.009 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.039 4.039 18 H 0.076 0.924 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.117 0.883 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.543 11.265 5.486 12.786 hybrid contribution 0.429 -1.172 0.867 1.520 sum -2.113 10.093 6.353 12.112 Atomic orbital electron populations 1.20878 0.92467 1.01812 1.02233 1.21130 0.95579 0.95203 1.00240 1.21970 0.96050 0.96662 1.03503 1.20472 0.92923 0.96793 1.01692 1.22173 0.98752 0.92073 0.94973 1.62501 1.01616 1.07846 1.53762 1.22388 0.97055 0.88087 0.98987 1.19083 0.96149 0.91494 0.94194 1.21168 1.18089 0.97385 1.19565 0.92853 1.24992 0.95247 0.98784 0.95263 1.69964 1.29677 1.31462 1.22129 0.86656 0.80273 0.83263 0.77779 1.20317 1.21261 1.20222 1.20888 0.89391 0.94259 0.99316 0.92398 0.91383 0.91940 0.88271 0.90542 0.91608 0.95375 0.90899 0.91952 0.96241 0.96559 0.95697 0.92950 0.94362 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.01 36.00 0.36 -1.10 16 2 C -0.12 -1.86 5.91 -101.01 -0.60 -2.46 16 3 C -0.16 -2.31 9.53 -35.89 -0.34 -2.66 16 4 C -0.08 -1.12 6.32 -28.03 -0.18 -1.29 16 5 C 0.05 0.78 5.59 -3.59 -0.02 0.76 16 6 N -0.53 -10.37 4.72 -236.12 -1.11 -11.48 16 7 C 0.06 1.35 4.89 -3.82 -0.02 1.33 16 8 C 0.03 0.75 4.89 -27.88 -0.14 0.62 16 9 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 10 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 13 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.09 1.62 4.98 -5.28 -0.03 1.60 16 18 H 0.06 0.62 7.61 -51.93 -0.40 0.22 16 19 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.10 1.20 7.63 -52.48 -0.40 0.80 16 22 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 26 H 0.06 1.34 7.94 -51.93 -0.41 0.93 16 27 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 28 H 0.02 0.45 6.67 -51.93 -0.35 0.11 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.04 0.69 8.06 -51.93 -0.42 0.28 16 32 H 0.09 1.86 6.73 -51.93 -0.35 1.51 16 LS Contribution 261.00 15.07 3.93 3.93 Total: -1.00 -30.36 261.00 -8.06 -38.42 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.23 Total: -4.28 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -1.37 Total: -16.99 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.38 Total: -37.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.36 -8.06 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335023123.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.465 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds