Wall clock time and date at job start Sun Mar 29 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47267 * 239.99577 * 3 2 1 5 5 H 1.48502 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47223 * 120.00060 * 3 2 1 7 7 C 1.38812 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99938 * 197.47091 * 7 2 1 9 9 N 1.36933 * 119.99722 * 17.75796 * 7 2 1 10 10 C 1.44491 * 117.17959 * 24.35134 * 9 7 2 11 11 C 1.51249 * 113.00639 * 150.65917 * 10 9 7 12 12 C 1.50207 * 113.35848 * 37.44703 * 11 10 9 13 13 H 1.09002 * 108.37867 * 185.94716 * 12 11 10 14 14 O 1.45640 * 115.65571 * 63.97471 * 12 11 10 15 15 C 1.44448 * 105.78747 * 192.67608 * 14 12 11 16 16 C 1.54483 * 107.11656 * 26.98735 * 15 14 12 17 17 C 1.54474 * 112.94777 * 306.40333 * 12 11 10 18 18 H 1.08999 * 113.26686 * 289.18735 * 17 12 11 19 19 C 1.44518 * 117.17728 * 204.61931 * 9 7 2 20 20 H 0.97009 * 119.99710 * 359.97438 * 1 2 3 21 21 H 1.08995 * 108.69094 * 273.61979 * 10 9 7 22 22 H 1.09007 * 108.68750 * 31.57753 * 10 9 7 23 23 H 1.08995 * 110.39101 * 275.41203 * 11 10 9 24 24 H 1.09005 * 107.34400 * 157.32476 * 11 10 9 25 25 H 1.09002 * 109.91102 * 267.61664 * 15 14 12 26 26 H 1.08997 * 109.90736 * 146.35929 * 15 14 12 27 27 H 1.08996 * 110.60935 * 242.20251 * 16 15 14 28 28 H 1.09002 * 110.60464 * 119.24107 * 16 15 14 29 29 H 1.09003 * 108.81735 * 334.61438 * 19 9 7 30 30 H 1.09001 * 108.82114 * 92.90017 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2813 9 7 1.3744 -2.3599 -0.3606 10 6 0.2180 -2.2379 -1.2183 11 6 0.0122 -3.4435 -2.1081 12 6 0.3435 -4.7445 -1.4344 13 1 0.2700 -5.5426 -2.1731 14 8 -0.4913 -5.0942 -0.2934 15 6 0.1817 -6.1897 0.3649 16 6 1.6881 -6.0522 0.0512 17 6 1.7633 -4.7632 -0.8260 18 1 2.5530 -4.7948 -1.5766 19 6 1.9145 -3.5977 0.1538 20 1 -0.4850 0.8401 0.0004 21 1 -0.6614 -2.0689 -0.5970 22 1 0.3547 -1.3734 -1.8681 23 1 0.6164 -3.3567 -3.0111 24 1 -1.0392 -3.4595 -2.3956 25 1 -0.1920 -7.1392 -0.0183 26 1 0.0200 -6.1317 1.4413 27 1 2.0442 -6.9177 -0.5076 28 1 2.2612 -5.9251 0.9696 29 1 2.9733 -3.4560 0.3709 30 1 1.3984 -3.8483 1.0806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335436798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:25 Heat of formation + Delta-G solvation = -20.298632 kcal Electronic energy + Delta-G solvation = -13301.044650 eV Core-core repulsion = 11096.981946 eV Total energy + Delta-G solvation = -2204.062705 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.52430 -35.78329 -32.38299 -31.96684 -30.13538 -27.88190 -24.99502 -22.91971 -22.02660 -20.80559 -18.44015 -16.67593 -15.78795 -15.20153 -14.97897 -14.25503 -13.73560 -13.47959 -13.12820 -12.59918 -12.15657 -11.71504 -11.34113 -11.10763 -11.02755 -10.77899 -10.61815 -10.24462 -10.02463 -9.84296 -9.65365 -9.43099 -8.99758 -8.34786 -6.57613 -5.62492 -3.11277 3.43192 3.48693 3.50105 4.29094 4.56328 4.93624 5.17495 5.28985 5.43967 5.47847 5.65840 5.72324 5.88515 5.99677 6.01148 6.15153 6.16574 6.38070 6.47409 6.60683 6.73857 6.82719 7.07420 7.34014 7.51597 7.89074 8.00869 8.57024 9.38108 10.07874 10.41790 11.38615 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062785 B = 0.011130 C = 0.010423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.862782 B = 2515.182992 C = 2685.769032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.267 4.267 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.191 3.809 11 C -0.129 4.129 12 C 0.095 3.905 13 H 0.042 0.958 14 O -0.367 6.367 15 C 0.049 3.951 16 C -0.152 4.152 17 C -0.133 4.133 18 H 0.089 0.911 19 C 0.174 3.826 20 H 0.253 0.747 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -10.154 -2.466 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.065 3.935 11 C -0.167 4.167 12 C 0.037 3.963 13 H 0.060 0.940 14 O -0.286 6.286 15 C -0.029 4.029 16 C -0.190 4.190 17 C -0.152 4.152 18 H 0.107 0.893 19 C 0.047 3.953 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 1.641 -9.947 -2.412 10.366 hybrid contribution 0.617 0.706 -0.031 0.938 sum 2.258 -9.241 -2.443 9.821 Atomic orbital electron populations 1.70123 1.05161 1.25280 1.54075 1.24997 0.95250 0.98245 1.01064 0.86390 0.78898 0.83580 0.78026 1.21151 1.21668 1.20969 1.19271 0.93063 0.85466 1.41842 0.91694 1.42839 1.32624 1.01386 1.54602 1.19786 0.90719 0.91864 0.91086 1.21162 1.01182 0.95271 0.99115 1.22292 0.89080 0.96891 0.88017 0.93980 1.89304 1.45720 1.51313 1.42292 1.23163 0.91656 0.90061 0.98003 1.23299 0.96855 0.98083 1.00752 1.23244 0.97592 0.95944 0.98454 0.89296 1.20229 0.96659 0.85356 0.93056 0.93729 0.93450 0.93495 0.91591 0.92188 0.93238 0.90405 0.91608 0.90485 0.94256 0.97117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 10.74 55.49 0.60 -26.52 16 2 C 0.00 0.09 4.81 -17.43 -0.08 0.01 16 3 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.27 -7.60 9.32 -15.06 -0.14 -7.74 16 8 H 0.07 1.80 7.70 -52.49 -0.40 1.40 16 9 N -0.59 -15.63 3.18 -177.42 -0.56 -16.20 16 10 C 0.19 4.88 4.78 -6.00 -0.03 4.85 16 11 C -0.13 -2.62 5.78 -29.00 -0.17 -2.79 16 12 C 0.09 1.77 2.98 -27.35 -0.08 1.69 16 13 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 14 O -0.37 -7.40 11.15 -35.23 -0.39 -7.79 16 15 C 0.05 0.75 7.39 37.94 0.28 1.03 16 16 C -0.15 -2.20 6.25 -24.29 -0.15 -2.35 16 17 C -0.13 -2.38 3.95 -88.18 -0.35 -2.73 16 18 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 19 C 0.17 3.87 5.24 -5.09 -0.03 3.84 16 20 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 22 H 0.05 1.29 6.99 -51.93 -0.36 0.92 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 29 H 0.04 0.85 7.73 -51.93 -0.40 0.45 16 30 H 0.01 0.26 7.31 -51.93 -0.38 -0.12 16 LS Contribution 236.44 15.07 3.56 3.56 Total: -1.00 -31.28 236.44 -6.99 -38.27 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.42 Total: -4.34 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.75 Total: -4.18 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.03 Total: -42.72 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.39 Total: -7.79 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.28 -6.99 -38.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335436798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.969 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds