Wall clock time and date at job start Sun Mar 29 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47267 * 239.99577 * 3 2 1 5 5 H 1.48502 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47223 * 120.00060 * 3 2 1 7 7 C 1.38812 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99938 * 197.47091 * 7 2 1 9 9 N 1.36933 * 119.99722 * 17.75796 * 7 2 1 10 10 C 1.44491 * 117.17959 * 24.35134 * 9 7 2 11 11 C 1.51249 * 113.00639 * 150.65917 * 10 9 7 12 12 C 1.50207 * 113.35848 * 37.44703 * 11 10 9 13 13 H 1.09002 * 108.37867 * 185.94716 * 12 11 10 14 14 O 1.45640 * 115.65571 * 63.97471 * 12 11 10 15 15 C 1.44448 * 105.78747 * 192.67608 * 14 12 11 16 16 C 1.54483 * 107.11656 * 26.98735 * 15 14 12 17 17 C 1.54474 * 112.94777 * 306.40333 * 12 11 10 18 18 H 1.08999 * 113.26686 * 289.18735 * 17 12 11 19 19 C 1.44518 * 117.17728 * 204.61931 * 9 7 2 20 20 H 0.97009 * 119.99710 * 359.97438 * 1 2 3 21 21 H 1.08995 * 108.69094 * 273.61979 * 10 9 7 22 22 H 1.09007 * 108.68750 * 31.57753 * 10 9 7 23 23 H 1.08995 * 110.39101 * 275.41203 * 11 10 9 24 24 H 1.09005 * 107.34400 * 157.32476 * 11 10 9 25 25 H 1.09002 * 109.91102 * 267.61664 * 15 14 12 26 26 H 1.08997 * 109.90736 * 146.35929 * 15 14 12 27 27 H 1.08996 * 110.60935 * 242.20251 * 16 15 14 28 28 H 1.09002 * 110.60464 * 119.24107 * 16 15 14 29 29 H 1.09003 * 108.81735 * 334.61438 * 19 9 7 30 30 H 1.09001 * 108.82114 * 92.90017 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2813 9 7 1.3744 -2.3599 -0.3606 10 6 0.2180 -2.2379 -1.2183 11 6 0.0122 -3.4435 -2.1081 12 6 0.3435 -4.7445 -1.4344 13 1 0.2700 -5.5426 -2.1731 14 8 -0.4913 -5.0942 -0.2934 15 6 0.1817 -6.1897 0.3649 16 6 1.6881 -6.0522 0.0512 17 6 1.7633 -4.7632 -0.8260 18 1 2.5530 -4.7948 -1.5766 19 6 1.9145 -3.5977 0.1538 20 1 -0.4850 0.8401 0.0004 21 1 -0.6614 -2.0689 -0.5970 22 1 0.3547 -1.3734 -1.8681 23 1 0.6164 -3.3567 -3.0111 24 1 -1.0392 -3.4595 -2.3956 25 1 -0.1920 -7.1392 -0.0183 26 1 0.0200 -6.1317 1.4413 27 1 2.0442 -6.9177 -0.5076 28 1 2.2612 -5.9251 0.9696 29 1 2.9733 -3.4560 0.3709 30 1 1.3984 -3.8483 1.0806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335436798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:25 Heat of formation + Delta-G solvation = -41.598750 kcal Electronic energy + Delta-G solvation = -13301.968293 eV Core-core repulsion = 11096.981946 eV Total energy + Delta-G solvation = -2204.986347 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98809 -37.63746 -34.18566 -33.55421 -32.02397 -29.38097 -27.01972 -24.49373 -23.84863 -22.16906 -20.11872 -18.69010 -17.21691 -16.88383 -16.60144 -15.89429 -15.55073 -15.32505 -14.90644 -14.13766 -13.76512 -13.32345 -13.10462 -12.90948 -12.50084 -12.44621 -12.30417 -12.10420 -11.83736 -11.66366 -11.31110 -11.04238 -10.56398 -10.38251 -8.72391 -7.79884 -5.33871 1.45007 1.48127 1.55400 2.51225 2.96231 3.27072 3.57560 3.77302 3.89098 4.11079 4.22236 4.32719 4.45170 4.57722 4.60503 4.70997 4.88746 4.95885 5.02103 5.06871 5.15102 5.21312 5.37990 5.44981 5.65898 5.88173 6.03824 6.38568 7.20242 8.02903 8.27947 9.18551 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062785 B = 0.011130 C = 0.010423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.862782 B = 2515.182992 C = 2685.769032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.284 4.284 8 H 0.070 0.930 9 N -0.606 5.606 10 C 0.205 3.795 11 C -0.125 4.125 12 C 0.088 3.912 13 H 0.081 0.919 14 O -0.407 6.407 15 C 0.040 3.960 16 C -0.139 4.139 17 C -0.129 4.129 18 H 0.110 0.890 19 C 0.168 3.832 20 H 0.248 0.752 21 H -0.001 1.001 22 H 0.015 0.985 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.042 0.958 30 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -11.830 -3.262 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.414 4.414 8 H 0.087 0.913 9 N -0.330 5.330 10 C 0.079 3.921 11 C -0.163 4.163 12 C 0.031 3.969 13 H 0.099 0.901 14 O -0.328 6.328 15 C -0.037 4.037 16 C -0.177 4.177 17 C -0.148 4.148 18 H 0.128 0.872 19 C 0.043 3.957 20 H 0.057 0.943 21 H 0.017 0.983 22 H 0.034 0.966 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 3.057 -11.659 -3.202 12.471 hybrid contribution 0.173 1.202 0.279 1.246 sum 3.230 -10.457 -2.923 11.328 Atomic orbital electron populations 1.70335 1.06800 1.25683 1.55400 1.25860 0.96061 1.01737 1.01131 0.85296 0.77523 0.78912 0.78458 1.20129 1.21993 1.19986 1.19694 0.93506 0.86742 1.41460 0.91271 1.43151 1.32555 1.02386 1.54883 1.19425 0.88660 0.93574 0.90451 1.21061 1.02252 0.94099 0.98885 1.22395 0.89128 0.96688 0.88658 0.90129 1.89272 1.47108 1.53151 1.43227 1.23437 0.92323 0.90024 0.97897 1.23273 0.96178 0.97493 1.00732 1.23212 0.97886 0.95330 0.98366 0.87158 1.20401 0.96040 0.85582 0.93695 0.94257 0.98346 0.96633 0.89202 0.91524 0.90154 0.90668 0.87764 0.90135 0.93964 0.99215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.48 10.74 21.65 0.23 -58.24 16 2 C -0.05 -3.08 4.81 84.86 0.41 -2.67 16 3 Si 0.97 46.38 29.59 68.60 2.03 48.41 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.28 -16.44 9.32 84.03 0.78 -15.66 16 8 H 0.07 3.85 7.70 -2.91 -0.02 3.83 16 9 N -0.61 -32.58 3.18 -715.23 -2.27 -34.85 16 10 C 0.20 10.79 4.78 86.18 0.41 11.20 16 11 C -0.12 -4.95 5.78 29.12 0.17 -4.79 16 12 C 0.09 3.08 2.98 30.19 0.09 3.17 16 13 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 14 O -0.41 -15.86 11.15 -148.98 -1.66 -17.52 16 15 C 0.04 1.12 7.39 72.49 0.54 1.66 16 16 C -0.14 -3.48 6.25 32.17 0.20 -3.28 16 17 C -0.13 -4.23 3.95 -9.21 -0.04 -4.27 16 18 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 19 C 0.17 7.43 5.24 86.75 0.45 7.88 16 20 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 21 H 0.00 -0.08 7.16 -2.39 -0.02 -0.10 16 22 H 0.02 0.88 6.99 -2.38 -0.02 0.86 16 23 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 24 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 29 H 0.04 1.80 7.73 -2.39 -0.02 1.78 16 30 H -0.01 -0.47 7.31 -2.39 -0.02 -0.49 16 Total: -1.00 -69.84 236.44 2.45 -67.39 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.10 Total: 1.57 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.02 Total: -6.75 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -2.04 Total: -93.10 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.66 Total: -17.52 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.84 2.45 -67.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335436798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.793 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds