Wall clock time and date at job start Sun Mar 29 2020 21:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36943 * 119.99642 * 2 1 4 4 H 1.08000 * 119.99828 * 203.24328 * 3 2 1 5 5 C 1.38812 * 120.00160 * 23.24959 * 3 2 1 6 6 N 1.31618 * 120.00089 * 14.13436 * 5 3 2 7 7 Si 1.86799 * 120.00016 * 194.13932 * 5 3 2 8 8 H 1.48499 * 109.47063 * 90.00081 * 7 5 3 9 9 H 1.48506 * 109.46772 * 209.99499 * 7 5 3 10 10 H 1.48500 * 109.47174 * 329.99402 * 7 5 3 11 11 C 1.46492 * 120.00343 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47032 * 90.00116 * 11 2 1 13 13 C 1.29437 * 117.96243 * 94.73806 * 12 11 2 14 14 C 1.50073 * 124.07926 * 180.74894 * 13 12 11 15 15 C 1.53028 * 110.14325 * 342.87058 * 14 13 12 16 16 C 1.53396 * 108.43981 * 49.43319 * 15 14 13 17 17 C 1.50069 * 117.96044 * 274.99696 * 12 11 2 18 18 H 1.09004 * 109.47127 * 275.17207 * 1 2 3 19 19 H 1.08994 * 109.47320 * 35.17628 * 1 2 3 20 20 H 1.09000 * 109.47075 * 155.17376 * 1 2 3 21 21 H 0.97003 * 120.00365 * 180.02562 * 6 5 3 22 22 H 1.09003 * 109.47154 * 330.00080 * 11 2 1 23 23 H 1.09000 * 109.47585 * 210.00325 * 11 2 1 24 24 H 1.08005 * 117.96342 * 0.72411 * 13 12 11 25 25 H 1.08993 * 109.36136 * 222.66524 * 14 13 12 26 26 H 1.09000 * 109.35707 * 103.06848 * 14 13 12 27 27 H 1.09000 * 109.63881 * 289.74754 * 15 14 13 28 28 H 1.08998 * 109.64301 * 169.11736 * 15 14 13 29 29 H 1.09001 * 109.64430 * 172.88206 * 16 15 14 30 30 H 1.09001 * 109.64279 * 52.24663 * 16 15 14 31 31 H 1.08999 * 109.36317 * 282.79500 * 17 12 11 32 32 H 1.08998 * 109.35400 * 42.52440 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1639 1.2240 -0.3691 5 6 1.5401 2.3393 0.4745 6 7 0.4279 2.2560 1.1734 7 14 2.2982 4.0096 0.1211 8 1 1.7508 4.5421 -1.1525 9 1 1.9742 4.9445 1.2285 10 1 3.7722 3.8699 0.0065 11 6 2.1975 -1.2686 -0.0006 12 6 2.4487 -1.7030 -1.4216 13 6 3.5811 -1.3853 -1.9622 14 6 3.9676 -1.7325 -3.3701 15 6 3.0594 -2.8405 -3.9079 16 6 1.6018 -2.4478 -3.6360 17 6 1.3681 -2.4718 -2.1238 18 1 -0.3633 0.0926 1.0235 19 1 -0.3633 0.8399 -0.5920 20 1 -0.3633 -0.9327 -0.4315 21 1 0.0017 3.0620 1.5047 22 1 1.6085 -2.0286 0.5129 23 1 3.1499 -1.1385 0.5134 24 1 4.2919 -0.8357 -1.3628 25 1 5.0026 -2.0737 -3.3869 26 1 3.8704 -0.8483 -4.0000 27 1 3.2868 -3.7786 -3.4015 28 1 3.2146 -2.9529 -4.9809 29 1 0.9339 -3.1596 -4.1212 30 1 1.4148 -1.4449 -4.0198 31 1 1.3731 -3.5040 -1.7738 32 1 0.4012 -2.0199 -1.9026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336198212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:14 Heat of formation + Delta-G solvation = 18.523115 kcal Electronic energy + Delta-G solvation = -12606.951250 eV Core-core repulsion = 10567.716555 eV Total energy + Delta-G solvation = -2039.234695 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.24722 -35.25540 -31.96402 -30.36891 -29.89226 -25.98973 -25.33019 -22.68486 -21.78898 -20.38604 -17.03425 -16.58277 -15.13550 -14.90362 -14.01364 -13.57778 -13.52817 -13.08968 -12.73083 -12.41140 -11.92677 -11.85884 -11.42153 -10.92442 -10.84247 -10.60079 -10.52849 -10.43139 -9.95420 -9.89835 -9.79075 -9.69002 -8.49405 -8.07365 -6.63856 -5.64735 -3.10965 3.00023 3.42407 3.48553 3.50038 4.58208 5.13359 5.16249 5.20964 5.49985 5.71214 5.76073 5.85861 5.90229 5.94175 5.99126 6.16346 6.23026 6.28744 6.41357 6.47541 6.62643 6.71429 6.83774 6.87473 7.34321 7.44093 7.78182 7.83576 7.88068 8.47505 9.31235 9.95050 10.44678 11.39673 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.010612 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.191746 B = 2637.773394 C = 2960.154897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.595 5.595 3 C -0.247 4.247 4 H 0.066 0.934 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.177 3.823 12 C -0.121 4.121 13 C -0.171 4.171 14 C -0.083 4.083 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.080 4.080 18 H 0.031 0.969 19 H 0.037 0.963 20 H -0.001 1.001 21 H 0.251 0.749 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -8.837 -7.417 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.317 5.317 3 C -0.377 4.377 4 H 0.084 0.916 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.050 3.950 12 C -0.124 4.124 13 C -0.190 4.190 14 C -0.120 4.120 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.117 4.117 18 H 0.049 0.951 19 H 0.056 0.944 20 H 0.017 0.983 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.974 -8.683 -7.297 11.726 hybrid contribution 0.324 1.134 -0.185 1.194 sum 3.298 -7.550 -7.482 11.129 Atomic orbital electron populations 1.20812 0.82810 0.95276 0.99321 1.43849 1.01657 1.00382 1.85827 1.19174 0.98340 0.85625 1.34583 0.91582 1.24992 0.98151 0.98393 0.98320 1.70074 1.20504 1.27046 1.37803 0.86277 0.78709 0.84350 0.77373 1.21617 1.21822 1.20522 1.19904 0.96343 0.88364 0.90350 1.21840 0.93958 0.96793 0.99780 1.21668 0.98356 1.02939 0.96080 1.20359 0.98458 0.98065 0.95167 1.21569 0.95603 0.98551 0.99679 1.21589 0.96082 1.01319 0.96608 1.20381 0.98469 0.98902 0.93913 0.95111 0.94433 0.98259 0.93879 0.94389 0.93134 0.88421 0.92192 0.91784 0.92206 0.92610 0.92554 0.91877 0.91913 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.98 59.85 0.54 4.67 16 2 N -0.60 -15.51 2.90 -182.51 -0.53 -16.04 16 3 C -0.25 -7.03 9.64 -15.06 -0.15 -7.17 16 4 H 0.07 1.85 7.87 -52.49 -0.41 1.44 16 5 C 0.00 -0.02 5.08 -17.43 -0.09 -0.11 16 6 N -0.91 -27.26 10.79 55.49 0.60 -26.66 16 7 Si 0.90 22.52 29.58 -169.99 -5.03 17.50 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 C 0.18 3.85 5.65 -5.20 -0.03 3.82 16 12 C -0.12 -2.29 5.42 -100.94 -0.55 -2.84 16 13 C -0.17 -3.09 9.37 -35.90 -0.34 -3.43 16 14 C -0.08 -1.24 6.12 -28.17 -0.17 -1.41 16 15 C -0.12 -1.54 6.01 -26.51 -0.16 -1.70 16 16 C -0.12 -1.71 6.01 -26.51 -0.16 -1.87 16 17 C -0.08 -1.31 5.80 -28.17 -0.16 -1.47 16 18 H 0.03 0.84 7.33 -51.93 -0.38 0.46 16 19 H 0.04 1.02 7.39 -51.93 -0.38 0.64 16 20 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 21 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.04 0.77 8.04 -51.93 -0.42 0.36 16 23 H 0.05 1.11 7.70 -51.93 -0.40 0.71 16 24 H 0.10 1.86 7.74 -52.48 -0.41 1.46 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.28 6.56 -51.93 -0.34 0.94 16 LS Contribution 257.03 15.07 3.87 3.87 Total: -1.00 -30.06 257.03 -7.52 -37.58 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -5.17 Total: -4.75 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.26 Total: -11.50 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.07 Total: -42.70 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.06 -7.52 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.102 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds