Wall clock time and date at job start Sun Mar 29 2020 22:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46585 * 264.52548 * 3 2 1 5 5 H 1.48490 * 109.47202 * 24.52848 * 3 2 1 6 6 H 1.48502 * 109.46753 * 144.53262 * 3 2 1 7 7 C 1.38812 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00255 * 337.55503 * 7 2 1 9 9 N 1.36935 * 119.99723 * 157.55406 * 7 2 1 10 10 C 1.47566 * 125.67770 * 341.49224 * 9 7 2 11 11 C 1.55205 * 105.01935 * 203.87247 * 10 9 7 12 12 C 1.53550 * 101.40153 * 324.60713 * 11 10 9 13 13 C 1.53201 * 111.87282 * 271.73982 * 12 11 10 14 14 C 1.54461 * 103.87349 * 219.89121 * 13 12 11 15 15 O 1.43883 * 107.26448 * 357.01845 * 14 13 12 16 16 C 1.44693 * 107.24258 * 25.94217 * 15 14 13 17 17 C 1.47440 * 125.67260 * 161.52655 * 9 7 2 18 18 H 0.97006 * 119.99787 * 0.02562 * 1 2 3 19 19 H 1.09007 * 110.33053 * 322.75382 * 10 9 7 20 20 H 1.09002 * 110.33626 * 84.88189 * 10 9 7 21 21 H 1.09004 * 111.04243 * 206.57684 * 11 10 9 22 22 H 1.09000 * 111.04218 * 82.63645 * 11 10 9 23 23 H 1.09002 * 110.56876 * 101.25391 * 13 12 11 24 24 H 1.08996 * 110.57413 * 338.52893 * 13 12 11 25 25 H 1.08997 * 109.88250 * 116.43514 * 14 13 12 26 26 H 1.09007 * 109.88361 * 237.44467 * 14 13 12 27 27 H 1.09000 * 110.63735 * 80.28995 * 16 15 14 28 28 H 1.08998 * 110.63941 * 203.17944 * 16 15 14 29 29 H 1.09004 * 109.98794 * 58.45749 * 17 9 7 30 30 H 1.09000 * 110.02995 * 297.15295 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6133 1.9796 -1.3937 5 1 1.3947 2.6833 0.5812 6 1 3.4852 1.4763 0.8124 7 6 2.0103 -1.2022 0.0005 8 1 1.5317 -2.1018 0.3580 9 7 3.3018 -1.2472 -0.4522 10 6 3.9504 -0.2333 -1.3059 11 6 5.1023 -0.9877 -2.0220 12 6 5.5535 -1.9637 -0.9259 13 6 6.6193 -1.3460 -0.0151 14 6 7.6099 -2.5045 0.2346 15 8 7.0802 -3.6687 -0.4245 16 6 6.2459 -3.2039 -1.5114 17 6 4.2756 -2.3174 -0.1684 18 1 -0.4850 0.8401 -0.0004 19 1 3.2413 0.1564 -2.0364 20 1 4.3484 0.5774 -0.6955 21 1 5.9076 -0.3052 -2.2940 22 1 4.7345 -1.5244 -2.8965 23 1 6.1752 -1.0130 0.9230 24 1 7.1183 -0.5170 -0.5169 25 1 8.5855 -2.2544 -0.1821 26 1 7.7007 -2.6906 1.3048 27 1 6.8547 -2.9307 -2.3733 28 1 5.5133 -3.9631 -1.7853 29 1 3.8888 -3.2751 -0.5169 30 1 4.4774 -2.3643 0.9017 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336552513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:15 Heat of formation + Delta-G solvation = -19.178403 kcal Electronic energy + Delta-G solvation = -13152.200472 eV Core-core repulsion = 10948.186343 eV Total energy + Delta-G solvation = -2204.014128 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95499 -36.68848 -32.87736 -30.96597 -29.55921 -28.68659 -25.80630 -23.11989 -22.44165 -20.86896 -19.07231 -16.90353 -16.00139 -15.46544 -15.22383 -14.60307 -14.51443 -13.66975 -13.32928 -12.66872 -12.22980 -12.09183 -11.78934 -11.54286 -11.25871 -11.00533 -10.86440 -10.47589 -10.23487 -9.98659 -9.94276 -9.51021 -9.38587 -8.66247 -7.02207 -5.93151 -3.22794 3.34484 3.47877 3.50415 4.05093 4.55888 4.72463 4.86657 4.92355 5.08951 5.24856 5.34845 5.47495 5.54135 5.75666 5.78277 5.87393 5.90244 6.02551 6.15659 6.20612 6.37920 6.56229 6.64446 6.68145 6.76533 7.01204 7.72531 8.32841 8.85105 9.70506 10.20249 11.23178 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060039 B = 0.011343 C = 0.010718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.250177 B = 2467.891854 C = 2611.898342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.610 5.610 10 C 0.112 3.888 11 C -0.117 4.117 12 C -0.105 4.105 13 C -0.141 4.141 14 C 0.050 3.950 15 O -0.382 6.382 16 C 0.064 3.936 17 C 0.153 3.847 18 H 0.263 0.737 19 H 0.058 0.942 20 H 0.025 0.975 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.024 -2.205 -2.807 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.337 5.337 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.106 4.106 13 C -0.179 4.179 14 C -0.027 4.027 15 O -0.301 6.301 16 C -0.013 4.013 17 C 0.028 3.972 18 H 0.073 0.927 19 H 0.076 0.924 20 H 0.042 0.958 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.813 -2.340 -2.694 14.267 hybrid contribution 0.380 1.345 0.051 1.399 sum 14.194 -0.995 -2.643 14.472 Atomic orbital electron populations 1.69851 1.05525 1.26523 1.53451 1.24998 0.95165 0.97363 1.00270 0.86957 0.79135 0.84789 0.77710 1.21258 1.23070 1.20375 1.18659 0.84389 0.95475 1.38190 0.89045 1.44952 1.09889 1.22269 1.56621 1.22002 0.93596 0.92454 0.93246 1.22554 0.98497 0.97523 0.97000 1.22051 0.96258 0.95695 0.96585 1.22825 0.96042 0.97985 1.01010 1.23208 0.96068 0.85534 0.97882 1.88877 1.66086 1.29171 1.45979 1.23432 0.92670 0.95616 0.89540 1.21140 0.86811 0.92561 0.96676 0.92747 0.92372 0.95794 0.91405 0.90829 0.90016 0.90805 0.92879 0.90169 0.92321 0.88741 0.94528 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 3 Si 0.88 22.88 24.27 -169.99 -4.13 18.76 16 4 H -0.29 -7.08 6.49 56.52 0.37 -6.71 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.28 -7.10 6.66 56.52 0.38 -6.72 16 7 C -0.24 -6.95 10.58 -15.06 -0.16 -7.11 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -15.07 3.22 -170.42 -0.55 -15.62 16 10 C 0.11 2.45 4.67 -2.29 -0.01 2.44 16 11 C -0.12 -1.95 6.06 -25.28 -0.15 -2.10 16 12 C -0.11 -1.72 0.71 -153.94 -0.11 -1.83 16 13 C -0.14 -2.04 6.13 -25.86 -0.16 -2.20 16 14 C 0.05 0.65 7.73 37.92 0.29 0.94 16 15 O -0.38 -5.85 11.53 -35.23 -0.41 -6.26 16 16 C 0.06 0.91 6.72 37.49 0.25 1.16 16 17 C 0.15 3.14 6.47 -3.68 -0.02 3.11 16 18 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 19 H 0.06 1.36 6.67 -51.93 -0.35 1.01 16 20 H 0.02 0.55 5.55 -51.93 -0.29 0.26 16 21 H 0.07 0.95 7.64 -51.93 -0.40 0.56 16 22 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 23 H 0.08 1.29 7.61 -51.93 -0.39 0.89 16 24 H 0.07 0.95 7.56 -51.93 -0.39 0.56 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.72 8.07 -51.93 -0.42 0.31 16 28 H 0.09 1.31 7.67 -51.93 -0.40 0.91 16 29 H 0.04 0.75 7.58 -51.93 -0.39 0.36 16 30 H 0.03 0.69 7.59 -51.93 -0.39 0.30 16 LS Contribution 234.43 15.07 3.53 3.53 Total: -1.00 -31.60 234.43 -5.24 -36.84 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -4.31 Total: -4.53 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.16 Total: -5.07 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.23 Total: -43.27 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.41 Total: -6.26 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.13 Total: 18.76 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.60 -5.24 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.661 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds