Wall clock time and date at job start Sun Mar 29 2020 22:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.50702 * 115.54889 * 65.05875 * 3 2 1 5 5 O 1.21276 * 119.99956 * 237.83483 * 4 3 2 6 6 N 1.34776 * 120.00173 * 58.11818 * 4 3 2 7 7 C 1.46497 * 120.00135 * 184.64186 * 6 4 3 8 8 C 1.50704 * 109.47015 * 179.97438 * 7 6 4 9 9 H 1.07994 * 120.00183 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99569 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99501 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00345 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47157 * 90.00055 * 12 10 8 14 14 H 1.48504 * 109.47239 * 209.99960 * 12 10 8 15 15 H 1.48500 * 109.47281 * 330.00008 * 12 10 8 16 16 C 1.53004 * 117.49745 * 210.72824 * 3 2 1 17 17 C 1.53001 * 117.50002 * 279.38700 * 3 2 1 18 18 H 1.09000 * 109.47209 * 54.89728 * 1 2 3 19 19 H 1.09006 * 109.47269 * 174.89526 * 1 2 3 20 20 H 1.08996 * 109.47248 * 294.89351 * 1 2 3 21 21 H 1.09003 * 109.46735 * 240.00095 * 2 1 3 22 22 H 1.08998 * 109.47175 * 120.00103 * 2 1 3 23 23 H 0.97005 * 119.99638 * 4.63764 * 6 4 3 24 24 H 1.08998 * 109.47192 * 299.99983 * 7 6 4 25 25 H 1.08997 * 109.46864 * 59.99904 * 7 6 4 26 26 H 0.97001 * 119.99674 * 180.02562 * 11 10 8 27 27 H 1.08994 * 117.49824 * 215.00477 * 16 3 2 28 28 H 1.09003 * 117.49719 * 0.02562 * 16 3 2 29 29 H 1.09000 * 117.49827 * 359.97438 * 17 3 2 30 30 H 1.09000 * 117.49989 * 144.97463 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7160 2.2464 1.2329 5 8 1.0896 3.2803 1.1353 6 7 2.1274 1.8193 2.4432 7 6 1.7267 2.5450 3.6511 8 6 2.3139 1.8672 4.8623 9 1 2.9248 0.9845 4.7440 10 6 2.0712 2.3741 6.1213 11 7 2.5841 1.7828 7.1782 12 14 1.0140 3.9004 6.3258 13 1 -0.4074 3.5006 6.4839 14 1 1.4542 4.6498 7.5300 15 1 1.1547 4.7645 5.1263 16 6 3.3754 1.7197 -0.6935 17 6 2.0667 2.1823 -1.3390 18 1 -0.3633 0.5909 -0.8408 19 1 -0.3634 -1.0236 -0.0914 20 1 -0.3633 0.4326 0.9321 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 2.6887 1.0314 2.5144 24 1 2.0907 3.5709 3.5962 25 1 0.6395 2.5489 3.7287 26 1 2.4130 2.1392 8.0640 27 1 4.0196 2.4834 -0.2580 28 1 3.8903 0.8744 -1.1501 29 1 1.7215 1.6413 -2.2199 30 1 1.8497 3.2505 -1.3282 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379317469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:30 Heat of formation + Delta-G solvation = -30.421329 kcal Electronic energy + Delta-G solvation = -12493.161693 eV Core-core repulsion = 10288.660035 eV Total energy + Delta-G solvation = -2204.501658 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.63503 -36.59938 -34.28109 -32.35250 -31.74825 -28.13491 -24.51419 -22.88218 -22.29725 -21.15055 -19.08084 -16.98804 -16.17492 -15.33314 -15.04459 -14.58690 -13.88674 -13.67893 -13.52556 -12.85185 -12.37238 -12.24389 -12.07346 -11.53503 -11.37512 -11.12027 -10.98652 -10.77344 -10.28227 -9.99686 -9.84108 -9.48756 -9.11505 -8.77361 -8.12521 -6.21289 -4.23363 3.13458 3.26846 3.33316 3.42146 3.79891 4.03441 4.33646 4.69240 4.91979 5.02279 5.14176 5.28201 5.42646 5.54374 5.65824 5.70931 5.92781 6.00355 6.10080 6.18598 6.22949 6.38540 6.81957 7.07437 7.25027 7.40310 8.15399 8.54240 8.76030 8.96550 9.39069 10.90685 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049904 B = 0.008723 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.937844 B = 3209.305125 C = 3301.533364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.157 4.157 4 C 0.538 3.462 5 O -0.557 6.557 6 N -0.700 5.700 7 C 0.220 3.780 8 C -0.542 4.542 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.892 5.892 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C -0.160 4.160 17 C -0.148 4.148 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.397 0.603 24 H 0.025 0.975 25 H 0.019 0.981 26 H 0.267 0.733 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -2.977 -14.029 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.160 4.160 4 C 0.322 3.678 5 O -0.437 6.437 6 N -0.348 5.348 7 C 0.098 3.902 8 C -0.580 4.580 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.530 5.530 12 Si 0.703 3.297 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.198 4.198 17 C -0.185 4.185 18 H 0.074 0.926 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.231 0.769 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.989 -2.232 -13.835 14.049 hybrid contribution -0.244 0.343 0.409 0.587 sum -1.233 -1.889 -13.426 13.614 Atomic orbital electron populations 1.21725 0.95204 1.01308 1.02562 1.21012 0.96376 0.91820 1.02484 1.21600 1.03385 0.97381 0.93633 1.19423 0.79523 0.84940 0.83903 1.90631 1.41830 1.24585 1.86635 1.46112 1.51225 1.31329 1.06093 1.19501 0.95505 0.92980 0.82242 1.21090 1.33477 1.14176 0.89284 0.90227 1.24797 0.95297 0.97012 0.95527 1.69886 1.44260 1.40344 0.98490 0.86822 0.81000 0.83528 0.78387 1.19849 1.20864 1.18515 1.23060 0.90189 1.03576 1.02937 1.22936 1.00078 1.01353 0.94131 0.92595 0.92608 0.92375 0.91364 0.90919 0.76926 0.95710 0.96269 0.92271 0.88459 0.88122 0.88391 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.71 37.16 0.36 -1.57 16 2 C -0.08 -0.99 5.80 -26.73 -0.16 -1.14 16 3 C -0.16 -2.32 1.91 -155.66 -0.30 -2.61 16 4 C 0.54 10.74 6.61 -10.98 -0.07 10.66 16 5 O -0.56 -13.23 16.53 5.56 0.09 -13.14 16 6 N -0.70 -14.73 5.54 -61.47 -0.34 -15.07 16 7 C 0.22 5.53 4.50 -5.19 -0.02 5.51 16 8 C -0.54 -15.06 9.83 -34.44 -0.34 -15.40 16 9 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 10 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 12 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 16 C -0.16 -1.97 9.93 -26.69 -0.26 -2.24 16 17 C -0.15 -1.90 9.77 -26.69 -0.26 -2.17 16 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 21 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 22 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 23 H 0.40 7.47 8.25 -40.82 -0.34 7.14 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.47 7.87 -51.93 -0.41 1.07 16 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -31.64 259.54 -5.83 -37.47 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.45 Total: 2.55 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.15 Total: -6.84 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.43 Total: -40.95 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.64 -5.83 -37.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379317469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.049 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds