Wall clock time and date at job start Sun Mar 29 2020 22:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.50702 * 115.54889 * 65.05875 * 3 2 1 5 5 O 1.21276 * 119.99956 * 237.83483 * 4 3 2 6 6 N 1.34776 * 120.00173 * 58.11818 * 4 3 2 7 7 C 1.46497 * 120.00135 * 184.64186 * 6 4 3 8 8 C 1.50704 * 109.47015 * 179.97438 * 7 6 4 9 9 H 1.07994 * 120.00183 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99569 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99501 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00345 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47157 * 90.00055 * 12 10 8 14 14 H 1.48504 * 109.47239 * 209.99960 * 12 10 8 15 15 H 1.48500 * 109.47281 * 330.00008 * 12 10 8 16 16 C 1.53004 * 117.49745 * 210.72824 * 3 2 1 17 17 C 1.53001 * 117.50002 * 279.38700 * 3 2 1 18 18 H 1.09000 * 109.47209 * 54.89728 * 1 2 3 19 19 H 1.09006 * 109.47269 * 174.89526 * 1 2 3 20 20 H 1.08996 * 109.47248 * 294.89351 * 1 2 3 21 21 H 1.09003 * 109.46735 * 240.00095 * 2 1 3 22 22 H 1.08998 * 109.47175 * 120.00103 * 2 1 3 23 23 H 0.97005 * 119.99638 * 4.63764 * 6 4 3 24 24 H 1.08998 * 109.47192 * 299.99983 * 7 6 4 25 25 H 1.08997 * 109.46864 * 59.99904 * 7 6 4 26 26 H 0.97001 * 119.99674 * 180.02562 * 11 10 8 27 27 H 1.08994 * 117.49824 * 215.00477 * 16 3 2 28 28 H 1.09003 * 117.49719 * 0.02562 * 16 3 2 29 29 H 1.09000 * 117.49827 * 359.97438 * 17 3 2 30 30 H 1.09000 * 117.49989 * 144.97463 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7160 2.2464 1.2329 5 8 1.0896 3.2803 1.1353 6 7 2.1274 1.8193 2.4432 7 6 1.7267 2.5450 3.6511 8 6 2.3139 1.8672 4.8623 9 1 2.9248 0.9845 4.7440 10 6 2.0712 2.3741 6.1213 11 7 2.5841 1.7828 7.1782 12 14 1.0140 3.9004 6.3258 13 1 -0.4074 3.5006 6.4839 14 1 1.4542 4.6498 7.5300 15 1 1.1547 4.7645 5.1263 16 6 3.3754 1.7197 -0.6935 17 6 2.0667 2.1823 -1.3390 18 1 -0.3633 0.5909 -0.8408 19 1 -0.3634 -1.0236 -0.0914 20 1 -0.3633 0.4326 0.9321 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 2.6887 1.0314 2.5144 24 1 2.0907 3.5709 3.5962 25 1 0.6395 2.5489 3.7287 26 1 2.4130 2.1392 8.0640 27 1 4.0196 2.4834 -0.2580 28 1 3.8903 0.8744 -1.1501 29 1 1.7215 1.6413 -2.2199 30 1 1.8497 3.2505 -1.3282 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379317469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:29 Heat of formation + Delta-G solvation = -52.504904 kcal Electronic energy + Delta-G solvation = -12494.119309 eV Core-core repulsion = 10288.660035 eV Total energy + Delta-G solvation = -2205.459274 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09613 -37.93006 -36.18977 -34.42592 -32.76738 -30.14664 -25.89951 -24.32581 -23.38133 -22.80646 -20.70818 -18.80778 -17.71435 -17.05608 -16.48979 -16.32235 -15.41266 -15.13505 -14.78348 -14.54731 -14.10574 -13.92600 -13.32418 -13.12464 -12.74326 -12.56291 -12.36027 -12.08241 -11.96752 -11.70305 -11.31739 -10.94848 -10.93315 -10.69396 -9.97337 -8.42912 -6.50078 1.29568 1.31820 1.44590 1.61966 2.25130 2.38535 2.81588 2.92128 3.64548 3.84902 3.91910 4.05118 4.43145 4.58271 4.61697 4.73619 4.76992 4.96627 4.98624 5.06308 5.09485 5.20597 5.22555 5.25116 5.38631 5.48938 6.05783 6.50346 6.80833 7.12340 7.36435 8.71825 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049904 B = 0.008723 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.937844 B = 3209.305125 C = 3301.533364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 C -0.175 4.175 4 C 0.534 3.466 5 O -0.601 6.601 6 N -0.701 5.701 7 C 0.232 3.768 8 C -0.547 4.547 9 H 0.060 0.940 10 C 0.028 3.972 11 N -0.929 5.929 12 Si 0.936 3.064 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.264 1.264 16 C -0.141 4.141 17 C -0.141 4.141 18 H 0.059 0.941 19 H 0.077 0.923 20 H 0.021 0.979 21 H 0.106 0.894 22 H 0.068 0.932 23 H 0.408 0.592 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.273 0.727 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -3.547 -15.833 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.178 4.178 4 C 0.322 3.678 5 O -0.483 6.483 6 N -0.349 5.349 7 C 0.108 3.892 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.173 4.173 11 N -0.568 5.568 12 Si 0.760 3.240 13 H -0.189 1.189 14 H -0.195 1.195 15 H -0.188 1.188 16 C -0.178 4.178 17 C -0.178 4.178 18 H 0.078 0.922 19 H 0.096 0.904 20 H 0.040 0.960 21 H 0.125 0.875 22 H 0.087 0.913 23 H 0.243 0.757 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.910 -2.828 -15.654 15.933 hybrid contribution -0.230 0.491 0.941 1.086 sum -1.140 -2.337 -14.713 14.941 Atomic orbital electron populations 1.21744 0.95886 1.02448 1.00776 1.21066 0.95737 0.90212 1.04151 1.21568 1.06393 0.98182 0.91634 1.20378 0.77958 0.84639 0.84848 1.90598 1.43548 1.26775 1.87353 1.45991 1.51760 1.31525 1.05625 1.19102 0.94555 0.92376 0.83166 1.21257 1.33082 1.13648 0.90457 0.92209 1.25588 0.96490 0.99908 0.95299 1.69979 1.45626 1.42009 0.99150 0.85874 0.79684 0.79961 0.78483 1.18879 1.19491 1.18813 1.23219 0.89257 1.04202 1.01119 1.23054 1.00371 1.00387 0.94007 0.92183 0.90395 0.95957 0.87537 0.91312 0.75673 0.97217 0.97269 0.91759 0.89663 0.84391 0.85023 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.71 71.98 0.70 -2.89 16 2 C -0.07 -1.62 5.80 30.59 0.18 -1.44 16 3 C -0.17 -4.80 1.91 -52.93 -0.10 -4.90 16 4 C 0.53 21.30 6.61 87.66 0.58 21.88 16 5 O -0.60 -28.96 16.53 -3.02 -0.05 -29.01 16 6 N -0.70 -29.72 5.54 -466.80 -2.59 -32.30 16 7 C 0.23 11.84 4.50 85.64 0.39 12.23 16 8 C -0.55 -30.86 9.83 25.60 0.25 -30.61 16 9 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 10 C 0.03 1.59 5.47 84.65 0.46 2.05 16 11 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 12 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 13 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 15 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 16 C -0.14 -3.00 9.93 30.62 0.30 -2.70 16 17 C -0.14 -3.24 9.77 30.62 0.30 -2.94 16 18 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 19 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 20 H 0.02 0.66 7.86 -2.39 -0.02 0.64 16 21 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 22 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 23 H 0.41 15.37 8.25 -92.70 -0.76 14.61 16 24 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 25 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.23 7.87 -2.39 -0.02 2.21 16 Total: -1.00 -69.11 259.54 2.90 -66.20 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.30 Total: 13.34 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 3.06 Total: -9.32 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -2.29 Total: -87.95 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -69.11 2.90 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379317469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.700 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds