Wall clock time and date at job start Sun Mar 29 2020 22:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47059 * 180.02562 * 14 13 11 16 16 C 1.53004 * 117.49759 * 243.62370 * 15 14 13 17 17 C 1.52996 * 117.50145 * 175.00164 * 15 14 13 18 18 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 20 20 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 21 21 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 22 22 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 23 23 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 24 24 H 1.08996 * 109.47366 * 299.99598 * 14 13 11 25 25 H 1.08992 * 109.47635 * 60.00246 * 14 13 11 26 26 H 1.09001 * 115.54850 * 29.32521 * 15 14 13 27 27 H 1.08996 * 117.49992 * 359.97438 * 16 15 14 28 28 H 1.09001 * 117.49660 * 145.01544 * 16 15 14 29 29 H 1.09007 * 117.49716 * 214.97980 * 17 15 14 30 30 H 1.08993 * 117.49910 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 6 8.1773 -5.2465 -0.0018 16 6 8.9808 -5.7130 1.2139 17 6 9.6874 -5.4618 -0.1197 18 1 -0.4849 0.8401 0.0004 19 1 3.8746 -0.6809 0.8905 20 1 3.8752 -0.6798 -0.8895 21 1 3.6584 -3.1503 -0.8903 22 1 3.6578 -3.1508 0.8896 23 1 5.7173 -4.6439 -0.0016 24 1 8.0309 -3.2896 -0.8897 25 1 8.0303 -3.2909 0.8902 26 1 7.5258 -5.9750 -0.4845 27 1 9.1465 -4.9922 2.0144 28 1 8.8579 -6.7486 1.5311 29 1 10.0295 -6.3321 -0.6799 30 1 10.3176 -4.5758 -0.1967 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379325727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:08 Heat of formation + Delta-G solvation = -30.443370 kcal Electronic energy + Delta-G solvation = -11929.544912 eV Core-core repulsion = 9725.042298 eV Total energy + Delta-G solvation = -2204.502614 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.33912 -37.59060 -33.90591 -33.44596 -31.26799 -27.67853 -25.32743 -22.64751 -21.25499 -21.06301 -19.47164 -17.17973 -16.46361 -15.89656 -15.29367 -14.73277 -14.24302 -13.98754 -13.57893 -13.05310 -12.53813 -12.28187 -11.79002 -11.59424 -11.39429 -10.94188 -10.75190 -10.38496 -10.13615 -10.01941 -9.76071 -9.21065 -9.13700 -8.81145 -8.48651 -6.01221 -3.99765 3.15738 3.34012 3.39689 3.46078 3.57506 3.66588 4.45041 4.52948 4.65817 4.74263 5.03638 5.34400 5.35178 5.37933 5.60524 5.63649 5.72253 5.84931 5.99897 6.11619 6.13249 6.66710 6.73230 7.39283 7.46337 7.79094 7.83963 8.52397 8.69355 9.02041 9.62024 11.11673 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.087051 B = 0.006057 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.574684 B = 4621.313581 C = 4846.967806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.543 6.543 13 N -0.740 5.740 14 C 0.149 3.851 15 C -0.167 4.167 16 C -0.178 4.178 17 C -0.173 4.173 18 H 0.263 0.737 19 H 0.023 0.977 20 H 0.019 0.981 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.399 0.601 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.946 -11.684 0.427 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.297 3.703 12 O -0.419 6.419 13 N -0.394 5.394 14 C 0.025 3.975 15 C -0.186 4.186 16 C -0.215 4.215 17 C -0.211 4.211 18 H 0.073 0.927 19 H 0.042 0.958 20 H 0.037 0.963 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.233 0.767 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.235 -10.779 0.432 19.492 hybrid contribution 0.142 0.368 -0.034 0.396 sum 16.376 -10.410 0.397 19.409 Atomic orbital electron populations 1.69914 1.06300 1.26952 1.51155 1.24973 0.94702 0.99230 0.94330 0.86792 0.80621 0.83375 0.78749 1.20237 1.21445 1.18538 1.21126 0.89306 0.94565 1.51268 0.90937 1.19371 0.96379 0.90283 0.97659 1.21665 0.87972 1.03235 1.03327 1.21547 0.91610 0.82771 0.74350 1.90648 1.70884 1.31523 1.48845 1.46149 1.06368 1.09286 1.77596 1.20795 0.81008 0.93646 1.02019 1.22488 0.94841 0.97707 1.03540 1.23085 1.04145 1.02469 0.91769 1.22946 0.93993 1.03526 1.00606 0.92734 0.95840 0.96273 0.89633 0.89594 0.76690 0.91483 0.91721 0.87190 0.88527 0.88689 0.88562 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 10 C -0.12 -2.41 5.64 -27.88 -0.16 -2.57 16 11 C 0.51 9.52 7.83 -10.98 -0.09 9.43 16 12 O -0.54 -12.39 15.98 5.56 0.09 -12.31 16 13 N -0.74 -10.17 5.56 -60.30 -0.33 -10.50 16 14 C 0.15 1.83 5.96 -4.04 -0.02 1.81 16 15 C -0.17 -1.51 5.85 -90.62 -0.53 -2.04 16 16 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 17 C -0.17 -1.34 10.25 -26.73 -0.27 -1.62 16 18 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 19 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 20 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 21 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 22 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 23 H 0.40 4.27 8.40 -40.82 -0.34 3.93 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 26 H 0.11 0.89 8.04 -51.93 -0.42 0.47 16 27 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 260.06 15.07 3.92 3.92 Total: -1.00 -33.79 260.06 -6.56 -40.35 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.47 Total: -1.82 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.87 Total: -10.32 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.44 Total: -37.99 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.79 -6.56 -40.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379325727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.904 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds