Wall clock time and date at job start Sun Mar 29 2020 21:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33147 * 120.00444 * 2 1 4 4 C 1.46874 * 120.00386 * 172.96196 * 3 2 1 5 5 O 1.21574 * 119.99647 * 354.03170 * 4 3 2 6 6 O 1.34809 * 119.99756 * 173.75845 * 4 3 2 7 7 C 1.34838 * 116.99361 * 180.27128 * 6 4 3 8 8 H 1.07996 * 120.00279 * 0.02562 * 7 6 4 9 9 C 1.38836 * 119.99444 * 180.02562 * 7 6 4 10 10 N 1.31407 * 119.99922 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99821 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47036 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47354 * 119.99934 * 11 9 7 14 14 H 1.48506 * 109.47019 * 240.00060 * 11 9 7 15 15 C 1.50700 * 119.99893 * 180.02562 * 2 1 3 16 16 C 1.53008 * 117.49675 * 1.68390 * 15 2 1 17 17 C 1.53008 * 117.49657 * 293.02813 * 15 2 1 18 18 H 1.09000 * 109.47393 * 89.99892 * 1 2 3 19 19 H 1.09007 * 109.47091 * 210.00468 * 1 2 3 20 20 H 1.09001 * 109.46902 * 329.99670 * 1 2 3 21 21 H 1.08009 * 119.99465 * 352.96011 * 3 2 1 22 22 H 0.97003 * 119.98979 * 179.97438 * 10 9 7 23 23 H 1.08997 * 115.55446 * 147.35712 * 15 2 1 24 24 H 1.08993 * 117.50318 * 0.02562 * 16 15 2 25 25 H 1.09000 * 117.49228 * 145.02360 * 16 15 2 26 26 H 1.09002 * 117.49443 * 214.98206 * 17 15 2 27 27 H 1.08996 * 117.50238 * 359.97228 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1530 0.0000 4 6 3.6333 1.1578 0.1558 5 8 4.2226 0.1213 0.3932 6 8 4.3207 2.3106 0.0303 7 6 5.6592 2.2444 0.1795 8 1 6.1329 1.2969 0.3894 9 6 6.4282 3.3945 0.0634 10 7 5.8518 4.5473 -0.1925 11 14 8.2826 3.3027 0.2694 12 1 8.6807 1.8996 0.5490 13 1 8.9427 3.7660 -0.9775 14 1 8.6984 4.1697 1.4012 15 6 2.2605 -1.3051 -0.0006 16 6 1.4388 -2.5952 -0.0410 17 6 2.1539 -2.1829 1.2481 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6389 2.0849 -0.1146 22 1 6.3892 5.3508 -0.2732 23 1 3.2127 -1.2981 -0.5310 24 1 0.3534 -2.5000 -0.0677 25 1 1.8507 -3.4369 -0.5978 26 1 3.0359 -2.7535 1.5389 27 1 1.5392 -1.8163 2.0701 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388448313.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:03 Heat of formation + Delta-G solvation = -62.435759 kcal Electronic energy + Delta-G solvation = -12019.693253 eV Core-core repulsion = 9743.396162 eV Total energy + Delta-G solvation = -2276.297091 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03874 -39.03348 -37.00567 -34.38438 -34.21282 -29.36803 -27.36859 -24.61914 -23.22150 -22.30948 -19.91453 -19.40687 -18.42013 -16.95082 -16.61037 -16.32339 -15.95043 -15.05880 -14.43143 -14.09597 -13.89420 -13.57388 -13.17688 -13.07817 -12.55448 -12.33961 -12.21018 -12.12724 -11.97922 -11.66665 -11.32288 -10.72124 -10.54324 -9.86097 -8.55202 -6.32241 0.30386 1.32221 1.37974 1.51560 2.13534 2.18689 2.92456 2.98376 3.08121 3.64005 3.99596 4.09695 4.25738 4.43414 4.60162 4.72008 4.76721 4.83479 4.97335 5.07984 5.18102 5.24968 5.30663 5.42688 5.76284 5.84416 6.70913 6.90038 7.82294 8.66793 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.064717 B = 0.008401 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.551164 B = 3332.310686 C = 3690.711014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.006 3.994 3 C -0.217 4.217 4 C 0.421 3.579 5 O -0.570 6.570 6 O -0.250 6.250 7 C -0.418 4.418 8 H 0.080 0.920 9 C -0.008 4.008 10 N -0.905 5.905 11 Si 1.021 2.979 12 H -0.265 1.265 13 H -0.258 1.258 14 H -0.258 1.258 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.162 4.162 18 H 0.099 0.901 19 H 0.096 0.904 20 H 0.083 0.917 21 H 0.144 0.856 22 H 0.279 0.721 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -9.200 0.405 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.005 3.995 3 C -0.236 4.236 4 C 0.272 3.728 5 O -0.470 6.470 6 O -0.160 6.160 7 C -0.494 4.494 8 H 0.098 0.902 9 C -0.208 4.208 10 N -0.543 5.543 11 Si 0.839 3.161 12 H -0.189 1.189 13 H -0.183 1.183 14 H -0.183 1.183 15 C -0.172 4.172 16 C -0.187 4.187 17 C -0.199 4.199 18 H 0.118 0.882 19 H 0.114 0.886 20 H 0.102 0.898 21 H 0.161 0.839 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.144 0.856 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.481 -9.219 0.431 13.231 hybrid contribution 1.207 0.350 0.054 1.258 sum -8.273 -8.869 0.485 12.139 Atomic orbital electron populations 1.21082 0.86858 1.04820 1.04649 1.22248 0.97519 0.91623 0.88082 1.21776 0.88620 1.00640 1.12549 1.22262 0.90874 0.81969 0.77650 1.90562 1.72432 1.33482 1.50532 1.83978 1.21921 1.34202 1.75851 1.21477 0.79166 0.96734 1.52004 0.90211 1.26613 1.06136 0.93114 0.94930 1.70082 1.38794 0.99676 1.45760 0.84536 0.73207 0.79098 0.79251 1.18907 1.18283 1.18278 1.21365 1.00469 0.89989 1.05403 1.23263 1.00082 0.96073 0.99300 1.22868 1.02973 1.02146 0.91937 0.88228 0.88571 0.89800 0.83876 0.91185 0.89186 0.85551 0.87767 0.89601 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.49 71.24 0.68 -1.64 15 2 C 0.01 0.20 5.81 -17.59 -0.10 0.10 15 3 C -0.22 -8.92 9.75 23.39 0.23 -8.70 15 4 C 0.42 23.09 7.75 70.08 0.54 23.63 15 5 O -0.57 -32.60 12.56 19.59 0.25 -32.35 15 6 O -0.25 -15.91 9.75 10.71 0.10 -15.81 15 7 C -0.42 -26.79 9.65 67.96 0.66 -26.13 15 8 H 0.08 5.17 6.86 -2.91 -0.02 5.15 15 9 C -0.01 -0.50 5.50 84.90 0.47 -0.03 15 10 N -0.91 -55.77 13.67 21.64 0.30 -55.48 15 11 Si 1.02 45.14 29.55 68.60 2.03 47.17 15 12 H -0.26 -11.54 7.11 99.48 0.71 -10.84 15 13 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 15 C -0.15 -5.18 4.34 -11.53 -0.05 -5.23 15 16 C -0.15 -3.38 9.79 30.62 0.30 -3.08 15 17 C -0.16 -4.58 10.24 30.62 0.31 -4.27 15 18 H 0.10 1.60 8.14 -2.39 -0.02 1.58 15 19 H 0.10 1.44 6.38 -2.38 -0.02 1.42 15 20 H 0.08 1.51 8.07 -2.39 -0.02 1.49 15 21 H 0.14 5.28 8.06 -2.91 -0.02 5.26 15 22 H 0.28 15.43 8.31 -92.71 -0.77 14.66 15 23 H 0.09 3.85 6.24 -2.39 -0.01 3.83 15 24 H 0.13 2.03 6.31 -2.39 -0.02 2.01 15 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 Total: -1.00 -76.73 241.96 6.87 -69.86 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.16 Total: 11.95 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.03 Total: -25.34 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.30 Total: -55.48 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: 0.35 Total: -48.16 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.73 6.87 -69.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388448313.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.425 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds