Wall clock time and date at job start Sun Mar 29 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33158 * 119.99713 * 2 1 4 4 C 1.46871 * 120.00005 * 353.10482 * 3 2 1 5 5 O 1.21572 * 120.00106 * 353.77484 * 4 3 2 6 6 O 1.34815 * 120.00000 * 173.77037 * 4 3 2 7 7 C 1.34829 * 116.99906 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00204 * 359.97438 * 7 6 4 9 9 C 1.38828 * 120.00130 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99797 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47194 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47154 * 119.99777 * 11 9 7 14 14 H 1.48501 * 109.46918 * 239.99381 * 11 9 7 15 15 C 1.50693 * 120.00352 * 180.02562 * 2 1 3 16 16 C 1.53000 * 117.49807 * 8.62065 * 15 2 1 17 17 C 1.53001 * 117.49936 * 299.99757 * 15 2 1 18 18 H 1.08999 * 109.47268 * 84.54000 * 1 2 3 19 19 H 1.08997 * 109.47005 * 204.53506 * 1 2 3 20 20 H 1.08999 * 109.47703 * 324.53544 * 1 2 3 21 21 H 1.07997 * 119.99896 * 173.10747 * 3 2 1 22 22 H 0.97001 * 119.99751 * 179.97438 * 10 9 7 23 23 H 1.09004 * 115.55447 * 154.32732 * 15 2 1 24 24 H 1.08997 * 117.49630 * 0.02562 * 16 15 2 25 25 H 1.09000 * 117.49667 * 145.02337 * 16 15 2 26 26 H 1.09002 * 117.50411 * 214.97704 * 17 15 2 27 27 H 1.09000 * 117.50066 * 359.97438 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1532 0.0000 4 6 1.4462 2.4205 -0.1527 5 8 0.2543 2.4129 -0.3921 6 8 2.1011 3.5922 -0.0273 7 6 1.3753 4.7184 -0.1786 8 1 0.3182 4.6551 -0.3907 9 6 1.9869 5.9593 -0.0628 10 7 3.2733 6.0362 0.1947 11 14 0.9815 7.5195 -0.2731 12 1 -0.4322 7.1631 -0.5553 13 1 1.0503 8.3244 0.9729 14 1 1.5274 8.3113 -1.4046 15 6 2.2605 -1.3050 -0.0006 16 6 1.4517 -2.5876 -0.2046 17 6 2.0262 -2.2566 1.1743 18 1 -0.3634 0.0978 -1.0230 19 1 -0.3633 -0.9349 0.4267 20 1 -0.3634 0.8370 0.5962 21 1 3.2468 1.1566 0.1122 22 1 3.7007 6.9033 0.2753 23 1 3.2632 -1.2688 -0.4266 24 1 0.3747 -2.4875 -0.3388 25 1 1.9223 -3.3955 -0.7650 26 1 2.8745 -2.8467 1.5211 27 1 1.3273 -1.9386 1.9480 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388448314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:05 Heat of formation + Delta-G solvation = -42.832330 kcal Electronic energy + Delta-G solvation = -11884.629454 eV Core-core repulsion = 9609.182431 eV Total energy + Delta-G solvation = -2275.447023 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08626 -37.80164 -35.31775 -32.56079 -32.11031 -27.62181 -25.44576 -23.59768 -22.35033 -20.34002 -17.95277 -17.65855 -16.43334 -15.71309 -14.80593 -14.45295 -14.24547 -13.89759 -12.76259 -12.65577 -12.38536 -11.71362 -11.59377 -11.35254 -11.15437 -10.98187 -10.73607 -10.40555 -10.36190 -10.30290 -9.76023 -8.71713 -8.57149 -8.42820 -6.39254 -4.02470 1.85313 3.16472 3.20764 3.28597 3.86987 3.99094 4.18157 4.49945 4.90776 5.01256 5.08174 5.19936 5.27441 5.55445 5.60244 5.84585 6.00497 6.09805 6.15048 6.26912 6.45256 6.73847 6.94567 7.22001 7.45682 7.99510 8.79271 9.09697 9.93699 10.79108 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.089575 B = 0.007279 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.513004 B = 3845.755808 C = 4076.980290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.162 4.162 4 C 0.424 3.576 5 O -0.554 6.554 6 O -0.212 6.212 7 C -0.375 4.375 8 H 0.097 0.903 9 C 0.039 3.961 10 N -0.863 5.863 11 Si 0.943 3.057 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.120 4.120 16 C -0.176 4.176 17 C -0.171 4.171 18 H 0.073 0.927 19 H 0.046 0.954 20 H 0.091 0.909 21 H 0.126 0.874 22 H 0.269 0.731 23 H 0.114 0.886 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 -11.904 0.518 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.181 4.181 4 C 0.274 3.726 5 O -0.453 6.453 6 O -0.119 6.119 7 C -0.452 4.452 8 H 0.114 0.886 9 C -0.165 4.165 10 N -0.500 5.500 11 Si 0.768 3.232 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.138 4.138 16 C -0.213 4.213 17 C -0.208 4.208 18 H 0.092 0.908 19 H 0.065 0.935 20 H 0.109 0.891 21 H 0.144 0.856 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.626 -11.708 0.493 11.831 hybrid contribution -0.212 0.812 -0.111 0.846 sum -1.838 -10.896 0.382 11.057 Atomic orbital electron populations 1.21069 0.91093 1.01646 1.03381 1.21559 0.95936 0.91859 0.95029 1.21730 1.00180 0.90090 1.06144 1.21047 0.86076 0.85643 0.79865 1.90601 1.16551 1.88111 1.50087 1.83953 1.40982 1.13054 1.73885 1.21316 0.94001 0.80799 1.49035 0.88586 1.25375 0.96168 0.98577 0.96383 1.69998 1.09481 1.25612 1.44887 0.85608 0.79509 0.79948 0.78158 1.18929 1.20174 1.20178 1.21164 0.99906 0.88706 1.03998 1.23039 1.00490 0.98024 0.99699 1.22967 1.03564 1.02488 0.91785 0.90844 0.93515 0.89092 0.85637 0.92116 0.86847 0.88141 0.88634 0.88540 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 7.91 36.00 0.28 -1.69 15 2 C -0.04 -0.73 5.81 -101.12 -0.59 -1.32 15 3 C -0.16 -3.32 9.79 -37.86 -0.37 -3.69 15 4 C 0.42 11.03 7.69 34.22 0.26 11.29 15 5 O -0.55 -14.99 12.53 -19.32 -0.24 -15.23 15 6 O -0.21 -6.34 9.75 -21.80 -0.21 -6.55 15 7 C -0.38 -11.40 9.65 30.95 0.30 -11.10 15 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 15 9 C 0.04 1.12 5.50 -17.51 -0.10 1.03 15 10 N -0.86 -25.83 13.67 55.49 0.76 -25.07 15 11 Si 0.94 21.63 29.55 -169.99 -5.02 16.61 15 12 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 15 C -0.12 -1.58 6.01 -91.77 -0.55 -2.13 15 16 C -0.18 -1.90 9.76 -26.73 -0.26 -2.16 15 17 C -0.17 -1.88 10.10 -26.73 -0.27 -2.15 15 18 H 0.07 1.29 8.05 -51.93 -0.42 0.87 15 19 H 0.05 0.64 6.31 -51.93 -0.33 0.31 15 20 H 0.09 1.82 6.12 -51.93 -0.32 1.50 15 21 H 0.13 2.34 8.06 -52.49 -0.42 1.92 15 22 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 23 H 0.11 1.39 8.14 -51.93 -0.42 0.96 15 24 H 0.10 1.08 6.42 -51.93 -0.33 0.75 15 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 241.73 15.07 3.64 3.64 Total: -1.00 -32.73 241.73 -5.37 -38.11 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.00 Total: 0.42 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.29 Total: -11.92 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.76 Total: -25.07 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.45 Total: -21.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.73 -5.37 -38.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388448314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.726 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds