Wall clock time and date at job start Sun Mar 29 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33158 * 119.99713 * 2 1 4 4 C 1.46871 * 120.00005 * 353.10482 * 3 2 1 5 5 O 1.21572 * 120.00106 * 353.77484 * 4 3 2 6 6 O 1.34815 * 120.00000 * 173.77037 * 4 3 2 7 7 C 1.34829 * 116.99906 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00204 * 359.97438 * 7 6 4 9 9 C 1.38828 * 120.00130 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99797 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47194 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47154 * 119.99777 * 11 9 7 14 14 H 1.48501 * 109.46918 * 239.99381 * 11 9 7 15 15 C 1.50693 * 120.00352 * 180.02562 * 2 1 3 16 16 C 1.53000 * 117.49807 * 8.62065 * 15 2 1 17 17 C 1.53001 * 117.49936 * 299.99757 * 15 2 1 18 18 H 1.08999 * 109.47268 * 84.54000 * 1 2 3 19 19 H 1.08997 * 109.47005 * 204.53506 * 1 2 3 20 20 H 1.08999 * 109.47703 * 324.53544 * 1 2 3 21 21 H 1.07997 * 119.99896 * 173.10747 * 3 2 1 22 22 H 0.97001 * 119.99751 * 179.97438 * 10 9 7 23 23 H 1.09004 * 115.55447 * 154.32732 * 15 2 1 24 24 H 1.08997 * 117.49630 * 0.02562 * 16 15 2 25 25 H 1.09000 * 117.49667 * 145.02337 * 16 15 2 26 26 H 1.09002 * 117.50411 * 214.97704 * 17 15 2 27 27 H 1.09000 * 117.50066 * 359.97438 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1532 0.0000 4 6 1.4462 2.4205 -0.1527 5 8 0.2543 2.4129 -0.3921 6 8 2.1011 3.5922 -0.0273 7 6 1.3753 4.7184 -0.1786 8 1 0.3182 4.6551 -0.3907 9 6 1.9869 5.9593 -0.0628 10 7 3.2733 6.0362 0.1947 11 14 0.9815 7.5195 -0.2731 12 1 -0.4322 7.1631 -0.5553 13 1 1.0503 8.3244 0.9729 14 1 1.5274 8.3113 -1.4046 15 6 2.2605 -1.3050 -0.0006 16 6 1.4517 -2.5876 -0.2046 17 6 2.0262 -2.2566 1.1743 18 1 -0.3634 0.0978 -1.0230 19 1 -0.3633 -0.9349 0.4267 20 1 -0.3634 0.8370 0.5962 21 1 3.2468 1.1566 0.1122 22 1 3.7007 6.9033 0.2753 23 1 3.2632 -1.2688 -0.4266 24 1 0.3747 -2.4875 -0.3388 25 1 1.9223 -3.3955 -0.7650 26 1 2.8745 -2.8467 1.5211 27 1 1.3273 -1.9386 1.9480 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388448314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:05 Heat of formation + Delta-G solvation = -63.319369 kcal Electronic energy + Delta-G solvation = -11885.517838 eV Core-core repulsion = 9609.182431 eV Total energy + Delta-G solvation = -2276.335408 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06534 -39.08612 -37.30135 -34.31185 -34.06311 -29.24673 -27.46531 -25.12965 -23.19237 -22.04015 -19.93397 -19.31716 -18.38837 -16.90571 -16.61671 -16.51384 -16.07527 -15.26049 -14.43382 -14.20496 -13.97499 -13.58549 -13.13388 -12.88646 -12.44346 -12.36778 -12.18728 -12.15228 -11.97931 -11.82949 -11.32470 -10.74194 -10.66761 -9.90736 -8.55703 -6.33018 0.26131 1.32847 1.38499 1.52366 2.12915 2.14807 2.82623 2.97895 3.05578 3.79677 3.89591 3.94640 4.15332 4.26205 4.61735 4.72137 4.76924 4.83726 5.01195 5.10720 5.14782 5.15346 5.28886 5.49207 5.66109 5.83349 6.67423 6.89178 7.79436 8.66143 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.089575 B = 0.007279 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.513004 B = 3845.755808 C = 4076.980290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.007 3.993 3 C -0.212 4.212 4 C 0.422 3.578 5 O -0.574 6.574 6 O -0.248 6.248 7 C -0.419 4.419 8 H 0.082 0.918 9 C -0.009 4.009 10 N -0.905 5.905 11 Si 1.022 2.978 12 H -0.264 1.264 13 H -0.258 1.258 14 H -0.259 1.259 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.157 4.157 18 H 0.071 0.929 19 H 0.088 0.912 20 H 0.058 0.942 21 H 0.139 0.861 22 H 0.279 0.721 23 H 0.126 0.874 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -13.601 0.582 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.006 3.994 3 C -0.231 4.231 4 C 0.274 3.726 5 O -0.474 6.474 6 O -0.157 6.157 7 C -0.495 4.495 8 H 0.100 0.900 9 C -0.208 4.208 10 N -0.542 5.542 11 Si 0.840 3.160 12 H -0.188 1.188 13 H -0.183 1.183 14 H -0.183 1.183 15 C -0.169 4.169 16 C -0.194 4.194 17 C -0.193 4.193 18 H 0.089 0.911 19 H 0.107 0.893 20 H 0.077 0.923 21 H 0.156 0.844 22 H 0.089 0.911 23 H 0.144 0.856 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.967 -13.437 0.561 13.592 hybrid contribution -0.172 1.048 -0.119 1.069 sum -2.139 -12.389 0.442 12.580 Atomic orbital electron populations 1.21088 0.91117 1.02508 1.02862 1.22071 0.96167 0.92861 0.88339 1.21631 1.00772 0.88425 1.12290 1.22130 0.86269 0.86400 0.77807 1.90566 1.17548 1.88545 1.50714 1.83972 1.41954 1.14106 1.75662 1.21517 0.93881 0.82093 1.52029 0.89988 1.26641 0.97553 1.01764 0.94868 1.70085 1.11282 1.27282 1.45572 0.84521 0.77483 0.74754 0.79245 1.18788 1.18275 1.18303 1.21262 1.00750 0.87357 1.07538 1.23205 1.00458 0.96265 0.99471 1.23114 1.04238 1.00546 0.91445 0.91081 0.89331 0.92314 0.84359 0.91147 0.85608 0.87890 0.86066 0.86114 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 7.91 71.23 0.56 -3.38 15 2 C 0.01 0.22 5.81 -17.60 -0.10 0.11 15 3 C -0.21 -8.86 9.79 23.39 0.23 -8.63 15 4 C 0.42 23.09 7.69 70.08 0.54 23.63 15 5 O -0.57 -32.51 12.53 19.60 0.25 -32.26 15 6 O -0.25 -15.72 9.75 10.75 0.10 -15.61 15 7 C -0.42 -26.75 9.65 67.96 0.66 -26.09 15 8 H 0.08 5.27 6.86 -2.91 -0.02 5.25 15 9 C -0.01 -0.50 5.50 84.90 0.47 -0.04 15 10 N -0.90 -55.55 13.67 21.64 0.30 -55.25 15 11 Si 1.02 44.84 29.55 68.60 2.03 46.87 15 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 13 H -0.26 -10.53 7.11 99.48 0.71 -9.83 15 14 H -0.26 -10.55 7.11 99.48 0.71 -9.85 15 15 C -0.15 -3.50 6.01 -11.54 -0.07 -3.57 15 16 C -0.16 -2.65 9.76 30.60 0.30 -2.35 15 17 C -0.16 -2.77 10.10 30.60 0.31 -2.46 15 18 H 0.07 2.44 8.05 -2.39 -0.02 2.42 15 19 H 0.09 2.16 6.31 -2.39 -0.02 2.15 15 20 H 0.06 2.37 6.12 -2.39 -0.01 2.36 15 21 H 0.14 5.30 8.06 -2.91 -0.02 5.27 15 22 H 0.28 15.40 8.31 -92.71 -0.77 14.63 15 23 H 0.13 2.68 8.14 -2.38 -0.02 2.66 15 24 H 0.10 1.72 6.42 -2.39 -0.02 1.70 15 25 H 0.12 1.51 8.14 -2.39 -0.02 1.49 15 26 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.09 1.75 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -74.84 241.73 6.73 -68.11 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.17 Total: 10.93 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 2.89 Total: -22.79 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.30 Total: -55.25 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: 0.35 Total: -47.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.84 6.73 -68.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388448314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.791 kcal (2) G-P(sol) polarization free energy of solvation -74.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds