Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99756 * 2 1 4 4 C 1.52998 * 109.46912 * 125.00010 * 3 2 1 5 5 C 1.52997 * 109.47232 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47499 * 179.97438 * 5 4 3 7 7 C 1.36943 * 120.00274 * 270.00442 * 6 5 4 8 8 H 1.07997 * 120.00300 * 144.92526 * 7 6 5 9 9 C 1.38817 * 119.99408 * 324.92321 * 7 6 5 10 10 N 1.31620 * 120.00119 * 337.93451 * 9 7 6 11 11 Si 1.86796 * 119.99584 * 157.93810 * 9 7 6 12 12 H 1.48491 * 109.47473 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47099 * 120.00190 * 11 9 7 14 14 H 1.48498 * 109.47119 * 239.99265 * 11 9 7 15 15 C 1.46504 * 120.00237 * 89.99677 * 6 5 4 16 16 C 1.53000 * 117.49921 * 183.24237 * 15 6 5 17 17 C 1.52998 * 117.49703 * 114.57839 * 15 6 5 18 18 H 1.07997 * 119.99714 * 179.97438 * 1 2 3 19 19 H 1.08006 * 120.00213 * 0.02562 * 1 2 3 20 20 H 1.07994 * 120.00054 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47280 * 4.99969 * 3 2 1 22 22 H 1.08992 * 109.47181 * 244.99947 * 3 2 1 23 23 H 1.09005 * 109.47181 * 59.99898 * 4 3 2 24 24 H 1.09004 * 109.47441 * 300.00027 * 4 3 2 25 25 H 1.09005 * 109.47091 * 59.99879 * 5 4 3 26 26 H 1.08998 * 109.47356 * 300.00334 * 5 4 3 27 27 H 0.96995 * 119.99672 * 175.91349 * 10 9 7 28 28 H 1.09004 * 115.54877 * 328.91115 * 15 6 5 29 29 H 1.08998 * 117.50153 * 359.97438 * 16 15 6 30 30 H 1.08995 * 117.49708 * 145.02504 * 16 15 6 31 31 H 1.08995 * 117.49988 * 214.98174 * 17 15 6 32 32 H 1.08997 * 117.49880 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 7 4.7302 2.6849 2.3131 7 6 4.3234 3.1839 3.5217 8 1 4.6907 2.7459 4.4380 9 6 3.4389 4.2527 3.5691 10 7 3.3232 5.0576 2.5341 11 14 2.4129 4.5486 5.1018 12 1 2.7266 3.5101 6.1157 13 1 2.7248 5.8911 5.6546 14 1 0.9710 4.4798 4.7531 15 6 6.0953 2.1781 2.1519 16 6 6.9942 2.1634 3.3900 17 6 7.2415 3.1840 2.2762 18 1 -0.5399 -0.9353 -0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.8500 -0.9352 -0.0004 21 1 1.3585 2.1317 0.0896 22 1 2.6212 1.4027 -0.9313 23 1 3.7400 0.5066 1.0921 24 1 2.4772 1.2356 2.1131 25 1 3.0957 3.4847 1.2706 26 1 4.3582 2.7550 0.2499 27 1 2.6633 5.7684 2.5440 28 1 6.2137 1.3663 1.4343 29 1 6.5700 2.5311 4.3243 30 1 7.7042 1.3421 3.4866 31 1 8.1141 3.0336 1.6406 32 1 6.9799 4.2228 2.4774 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388485892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = 52.719869 kcal Electronic energy + Delta-G solvation = -12349.057762 eV Core-core repulsion = 10311.305950 eV Total energy + Delta-G solvation = -2037.751812 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.11588 -35.40592 -33.40670 -31.30430 -29.26796 -25.45247 -23.57898 -21.39515 -20.72144 -19.57473 -19.42246 -16.22042 -15.50175 -14.88200 -14.60849 -13.97225 -13.47579 -12.98205 -12.66818 -12.15679 -11.80681 -11.14558 -10.99008 -10.89193 -10.74277 -10.59655 -10.48970 -10.07068 -9.81804 -9.58806 -9.47099 -9.22525 -8.94031 -8.42577 -6.52112 -5.74200 -3.34830 2.58218 3.35779 3.44835 3.47662 4.47772 4.97539 5.16627 5.34554 5.39168 5.50120 5.83029 5.95587 6.05396 6.10283 6.20243 6.27104 6.37236 6.52143 6.54010 6.67799 6.80602 6.87060 6.94377 7.08644 7.12067 7.25293 7.31193 7.76327 7.84533 8.51644 9.19803 9.83418 10.39110 11.20667 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.013417 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.824285 B = 2086.449458 C = 2956.704240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.094 4.094 4 C -0.128 4.128 5 C 0.144 3.856 6 N -0.554 5.554 7 C -0.254 4.254 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.885 5.885 11 Si 0.894 3.106 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.287 1.287 15 C 0.122 3.878 16 C -0.197 4.197 17 C -0.223 4.223 18 H 0.089 0.911 19 H 0.094 0.906 20 H 0.102 0.898 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.023 0.977 27 H 0.253 0.747 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -6.694 -3.596 7.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.156 4.156 3 C -0.132 4.132 4 C -0.167 4.167 5 C 0.019 3.981 6 N -0.270 5.270 7 C -0.383 4.383 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.217 1.217 14 H -0.214 1.214 15 C 0.012 3.988 16 C -0.236 4.236 17 C -0.265 4.265 18 H 0.108 0.892 19 H 0.112 0.888 20 H 0.120 0.880 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.944 -6.502 -3.596 7.490 hybrid contribution -0.513 0.184 0.806 0.973 sum -1.457 -6.319 -2.790 7.059 Atomic orbital electron populations 1.23755 0.96077 1.01257 1.03939 1.23108 0.95949 0.98989 0.97532 1.20776 0.98552 0.94361 0.99527 1.22112 0.97268 1.00753 0.96613 1.21012 0.93317 0.96048 0.87759 1.43471 1.04496 1.69430 1.09647 1.19120 1.25183 1.09039 0.84981 0.91702 1.25109 1.02369 0.94379 0.97264 1.70061 1.34711 1.16735 1.31218 0.86366 0.80405 0.77666 0.83237 1.20057 1.21694 1.21387 1.21218 0.83653 0.96584 0.97320 1.23028 1.03594 1.01434 0.95523 1.23369 1.02200 0.97842 1.03050 0.89220 0.88777 0.87984 0.91707 0.91679 0.93910 0.92274 0.88280 0.95811 0.93689 0.89658 0.88543 0.90831 0.91303 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.92 14.32 29.01 0.42 -2.50 16 2 C -0.14 -2.04 9.52 -36.03 -0.34 -2.38 16 3 C -0.09 -1.58 5.66 -27.88 -0.16 -1.74 16 4 C -0.13 -2.54 5.52 -26.73 -0.15 -2.69 16 5 C 0.14 3.38 5.34 -4.05 -0.02 3.35 16 6 N -0.55 -13.90 2.78 -165.66 -0.46 -14.36 16 7 C -0.25 -6.90 8.63 -15.05 -0.13 -7.03 16 8 H 0.07 1.78 6.55 -52.49 -0.34 1.43 16 9 C 0.01 0.24 4.96 -17.43 -0.09 0.15 16 10 N -0.88 -25.35 11.33 55.49 0.63 -24.72 16 11 Si 0.89 21.62 29.61 -169.99 -5.03 16.58 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 C 0.12 2.67 6.56 -67.93 -0.45 2.23 16 16 C -0.20 -4.01 9.80 -26.69 -0.26 -4.27 16 17 C -0.22 -4.69 10.36 -26.69 -0.28 -4.97 16 18 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 19 H 0.09 1.28 7.84 -52.48 -0.41 0.87 16 20 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 21 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.10 2.62 5.35 -51.93 -0.28 2.34 16 26 H 0.02 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 28 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.10 2.13 6.37 -51.93 -0.33 1.80 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 269.11 15.07 4.06 4.06 Total: -1.00 -28.23 269.11 -7.39 -35.62 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.13 Total: 2.68 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.45 Total: -19.85 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.17 Total: -39.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.23 -7.39 -35.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388485892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.340 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds