Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99756 * 2 1 4 4 C 1.52998 * 109.46912 * 125.00010 * 3 2 1 5 5 C 1.52997 * 109.47232 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47499 * 179.97438 * 5 4 3 7 7 C 1.36943 * 120.00274 * 270.00442 * 6 5 4 8 8 H 1.07997 * 120.00300 * 144.92526 * 7 6 5 9 9 C 1.38817 * 119.99408 * 324.92321 * 7 6 5 10 10 N 1.31620 * 120.00119 * 337.93451 * 9 7 6 11 11 Si 1.86796 * 119.99584 * 157.93810 * 9 7 6 12 12 H 1.48491 * 109.47473 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47099 * 120.00190 * 11 9 7 14 14 H 1.48498 * 109.47119 * 239.99265 * 11 9 7 15 15 C 1.46504 * 120.00237 * 89.99677 * 6 5 4 16 16 C 1.53000 * 117.49921 * 183.24237 * 15 6 5 17 17 C 1.52998 * 117.49703 * 114.57839 * 15 6 5 18 18 H 1.07997 * 119.99714 * 179.97438 * 1 2 3 19 19 H 1.08006 * 120.00213 * 0.02562 * 1 2 3 20 20 H 1.07994 * 120.00054 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47280 * 4.99969 * 3 2 1 22 22 H 1.08992 * 109.47181 * 244.99947 * 3 2 1 23 23 H 1.09005 * 109.47181 * 59.99898 * 4 3 2 24 24 H 1.09004 * 109.47441 * 300.00027 * 4 3 2 25 25 H 1.09005 * 109.47091 * 59.99879 * 5 4 3 26 26 H 1.08998 * 109.47356 * 300.00334 * 5 4 3 27 27 H 0.96995 * 119.99672 * 175.91349 * 10 9 7 28 28 H 1.09004 * 115.54877 * 328.91115 * 15 6 5 29 29 H 1.08998 * 117.50153 * 359.97438 * 16 15 6 30 30 H 1.08995 * 117.49708 * 145.02504 * 16 15 6 31 31 H 1.08995 * 117.49988 * 214.98174 * 17 15 6 32 32 H 1.08997 * 117.49880 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 7 4.7302 2.6849 2.3131 7 6 4.3234 3.1839 3.5217 8 1 4.6907 2.7459 4.4380 9 6 3.4389 4.2527 3.5691 10 7 3.3232 5.0576 2.5341 11 14 2.4129 4.5486 5.1018 12 1 2.7266 3.5101 6.1157 13 1 2.7248 5.8911 5.6546 14 1 0.9710 4.4798 4.7531 15 6 6.0953 2.1781 2.1519 16 6 6.9942 2.1634 3.3900 17 6 7.2415 3.1840 2.2762 18 1 -0.5399 -0.9353 -0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.8500 -0.9352 -0.0004 21 1 1.3585 2.1317 0.0896 22 1 2.6212 1.4027 -0.9313 23 1 3.7400 0.5066 1.0921 24 1 2.4772 1.2356 2.1131 25 1 3.0957 3.4847 1.2706 26 1 4.3582 2.7550 0.2499 27 1 2.6633 5.7684 2.5440 28 1 6.2137 1.3663 1.4343 29 1 6.5700 2.5311 4.3243 30 1 7.7042 1.3421 3.4866 31 1 8.1141 3.0336 1.6406 32 1 6.9799 4.2228 2.4774 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388485892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = 38.311048 kcal Electronic energy + Delta-G solvation = -12349.682575 eV Core-core repulsion = 10311.305950 eV Total energy + Delta-G solvation = -2038.376625 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89196 -36.81432 -35.17257 -33.09079 -30.95734 -27.26612 -25.32556 -23.06627 -22.36261 -21.42289 -20.60968 -18.19095 -17.29174 -16.49493 -16.20555 -15.74235 -14.96091 -14.52153 -14.38369 -13.81163 -13.55020 -13.00878 -12.65025 -12.61562 -12.45218 -12.22227 -12.06922 -11.84305 -11.56706 -11.36253 -11.21758 -10.88798 -10.46748 -10.13937 -8.52620 -7.78467 -5.44055 1.41725 1.45500 1.46801 1.55270 2.49011 3.14138 3.42009 3.52251 4.07112 4.25026 4.30785 4.45189 4.48158 4.54491 4.68425 4.79636 4.89514 4.93455 5.04042 5.10301 5.13815 5.33092 5.38464 5.52574 5.57208 5.68938 5.77916 5.90642 5.98355 6.46005 7.16113 7.87753 8.36785 9.11660 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.013417 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.824285 B = 2086.449458 C = 2956.704240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.088 4.088 4 C -0.111 4.111 5 C 0.144 3.856 6 N -0.573 5.573 7 C -0.257 4.257 8 H 0.059 0.941 9 C -0.040 4.040 10 N -0.915 5.915 11 Si 0.951 3.049 12 H -0.268 1.268 13 H -0.292 1.292 14 H -0.287 1.287 15 C 0.099 3.901 16 C -0.182 4.182 17 C -0.220 4.220 18 H 0.114 0.886 19 H 0.090 0.910 20 H 0.119 0.881 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.250 0.750 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -8.435 -3.780 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.172 4.172 3 C -0.126 4.126 4 C -0.150 4.150 5 C 0.019 3.981 6 N -0.290 5.290 7 C -0.387 4.387 8 H 0.077 0.923 9 C -0.237 4.237 10 N -0.560 5.560 11 Si 0.779 3.221 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.214 1.214 15 C -0.009 4.009 16 C -0.220 4.220 17 C -0.260 4.260 18 H 0.132 0.868 19 H 0.108 0.892 20 H 0.136 0.864 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.704 -8.261 -3.779 9.112 hybrid contribution -0.538 0.713 0.832 1.221 sum -1.241 -7.548 -2.947 8.197 Atomic orbital electron populations 1.23977 0.95849 1.02305 1.01824 1.23075 0.96374 0.98381 0.99356 1.20670 0.97912 0.95396 0.98604 1.21854 0.97413 0.98961 0.96818 1.20954 0.92890 0.96793 0.87512 1.43696 1.06290 1.69713 1.09306 1.19280 1.25050 1.08580 0.85833 0.92311 1.25761 1.03682 0.94489 0.99731 1.70180 1.35387 1.17402 1.33000 0.85466 0.78814 0.77326 0.80450 1.19263 1.21953 1.21356 1.21557 0.82432 0.97589 0.99297 1.23040 1.03250 1.01949 0.93799 1.23281 1.02957 0.95673 1.04138 0.86781 0.89161 0.86358 0.93076 0.90500 0.92661 0.94756 0.91517 0.95359 0.94047 0.86989 0.90868 0.86936 0.87898 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.08 14.32 67.78 0.97 -4.10 16 2 C -0.15 -4.23 9.52 25.64 0.24 -3.99 16 3 C -0.09 -2.87 5.66 29.85 0.17 -2.70 16 4 C -0.11 -4.35 5.52 30.59 0.17 -4.18 16 5 C 0.14 6.79 5.34 86.38 0.46 7.25 16 6 N -0.57 -28.81 2.78 -678.03 -1.88 -30.70 16 7 C -0.26 -14.17 8.63 84.03 0.73 -13.44 16 8 H 0.06 3.25 6.55 -2.91 -0.02 3.23 16 9 C -0.04 -2.22 4.96 84.86 0.42 -1.80 16 10 N -0.92 -53.91 11.33 21.65 0.25 -53.66 16 11 Si 0.95 45.15 29.61 68.60 2.03 47.18 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 15 C 0.10 4.22 6.56 44.99 0.30 4.52 16 16 C -0.18 -7.04 9.80 30.62 0.30 -6.74 16 17 C -0.22 -8.93 10.36 30.62 0.32 -8.61 16 18 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 19 H 0.09 2.31 7.84 -2.91 -0.02 2.29 16 20 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 21 H 0.05 1.78 7.79 -2.38 -0.02 1.76 16 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.07 3.63 5.35 -2.38 -0.01 3.62 16 26 H 0.03 1.26 8.07 -2.39 -0.02 1.25 16 27 H 0.25 14.21 8.32 -92.71 -0.77 13.44 16 28 H 0.11 4.13 8.14 -2.38 -0.02 4.11 16 29 H 0.07 3.18 6.37 -2.39 -0.02 3.17 16 30 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 32 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -60.87 269.11 5.52 -55.35 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.06 Total: 15.63 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 4.07 Total: -33.80 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.64 Total: -84.36 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -60.87 5.52 -55.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388485892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.657 kcal (2) G-P(sol) polarization free energy of solvation -60.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds