Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48494 * 109.47152 * 239.99972 * 3 2 1 5 5 H 1.48503 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47255 * 119.99998 * 3 2 1 7 7 C 1.38746 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99843 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.34311 * 117.00236 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00222 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.54546 * 34.33510 * 12 10 9 14 14 C 1.52996 * 117.52075 * 248.63812 * 12 10 9 15 15 C 1.52995 * 117.50030 * 180.02562 * 12 10 9 16 16 H 1.09001 * 117.49876 * 0.02562 * 15 12 10 17 17 C 1.53002 * 117.50008 * 215.00812 * 15 12 10 18 18 C 1.53002 * 117.49773 * 180.02562 * 17 15 12 19 19 C 1.53000 * 60.02940 * 252.51785 * 18 17 15 20 20 H 0.96997 * 120.00151 * 359.97438 * 1 2 3 21 21 H 1.08996 * 117.50176 * 145.03003 * 14 12 10 22 22 H 1.08998 * 117.49865 * 0.02562 * 14 12 10 23 23 H 1.09000 * 115.55766 * 325.68425 * 17 15 12 24 24 H 1.09002 * 117.49918 * 145.01819 * 18 17 15 25 25 H 1.09002 * 117.49754 * 0.02562 * 18 17 15 26 26 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 27 27 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2835 2.7465 0.0006 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3700 0.0016 10 6 2.0651 -3.4965 0.0015 11 8 3.2755 -3.4331 0.0010 12 6 1.3809 -4.8393 0.0032 13 1 0.4434 -4.8898 -0.5503 14 6 1.5018 -5.6927 1.2673 15 6 2.2694 -6.0848 0.0037 16 1 3.3488 -5.9331 0.0032 17 6 1.7741 -7.3062 -0.7734 18 6 2.6624 -8.5520 -0.7725 19 6 2.5431 -7.6993 -2.0372 20 1 -0.4850 0.8400 0.0004 21 1 0.6439 -6.3047 1.5453 22 1 2.0760 -5.2828 2.0982 23 1 0.6947 -7.4579 -0.7729 24 1 2.1673 -9.5231 -0.7717 25 1 3.5994 -8.5015 -0.2178 26 1 3.4017 -7.0875 -2.3145 27 1 1.9700 -8.1096 -2.8687 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388506327.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = -57.526613 kcal Electronic energy + Delta-G solvation = -11853.215861 eV Core-core repulsion = 9577.131646 eV Total energy + Delta-G solvation = -2276.084215 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24376 -39.24028 -37.30629 -35.85170 -34.33053 -28.13896 -25.73423 -24.44777 -23.14524 -21.58879 -20.88011 -19.92099 -18.62788 -17.02247 -16.74338 -16.40825 -16.14912 -15.40285 -14.73888 -14.08455 -13.74671 -13.32855 -13.20394 -12.52331 -12.43150 -12.30494 -12.20327 -12.14139 -12.04415 -11.79085 -11.10279 -10.97908 -10.73063 -10.45387 -8.57210 -6.38259 1.24006 1.31595 1.48302 1.54848 2.06901 2.47366 2.73828 2.93992 3.25666 3.61410 3.74297 3.95595 4.17517 4.25269 4.33725 4.39291 4.64328 4.78643 4.83229 5.00078 5.05545 5.15795 5.15972 5.31034 5.36786 5.79478 6.61015 6.86939 7.74092 8.63577 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.079075 B = 0.007228 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.011445 B = 3873.139450 C = 3960.517294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.080 0.920 9 O -0.241 6.241 10 C 0.421 3.579 11 O -0.587 6.587 12 C -0.169 4.169 13 H 0.138 0.862 14 C -0.126 4.126 15 C -0.079 4.079 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.156 4.156 19 C -0.186 4.186 20 H 0.280 0.720 21 H 0.142 0.858 22 H 0.088 0.912 23 H 0.124 0.876 24 H 0.119 0.881 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -12.526 -0.481 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.098 0.902 9 O -0.149 6.149 10 C 0.270 3.730 11 O -0.486 6.486 12 C -0.188 4.188 13 H 0.156 0.844 14 C -0.163 4.163 15 C -0.097 4.097 16 H 0.112 0.888 17 C -0.152 4.152 18 C -0.193 4.193 19 C -0.223 4.223 20 H 0.090 0.910 21 H 0.160 0.840 22 H 0.107 0.893 23 H 0.142 0.858 24 H 0.138 0.862 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.165 -12.353 -0.480 12.417 hybrid contribution 0.435 1.063 -0.082 1.152 sum 1.600 -11.289 -0.562 11.416 Atomic orbital electron populations 1.70074 1.07692 1.29583 1.46565 1.26597 0.96947 1.02403 0.94472 0.84667 0.77622 0.74095 0.79821 1.18584 1.18035 1.18533 1.21424 0.92170 0.81289 1.55425 0.90220 1.83889 1.40300 1.14167 1.76581 1.23455 0.86083 0.87518 0.75930 1.90487 1.17158 1.88622 1.52327 1.21683 1.03092 0.85622 1.08389 0.84420 1.23171 1.03590 0.99464 0.90064 1.21825 0.97012 0.91439 0.99449 0.88849 1.21763 0.98880 0.93844 1.00729 1.23033 1.01328 0.94896 1.00048 1.23049 1.02924 1.03939 0.92412 0.91038 0.83963 0.89298 0.85761 0.86240 0.88857 0.90198 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.69 13.67 21.62 0.30 -54.39 15 2 C 0.00 -0.23 5.49 84.87 0.47 0.24 15 3 Si 1.02 44.46 29.55 68.60 2.03 46.49 15 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 15 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 7 C -0.43 -27.10 9.64 67.94 0.66 -26.45 15 8 H 0.08 5.11 6.86 -2.91 -0.02 5.09 15 9 O -0.24 -15.04 9.75 14.88 0.15 -14.90 15 10 C 0.42 22.71 7.69 71.24 0.55 23.25 15 11 O -0.59 -34.21 15.49 20.78 0.32 -33.89 15 12 C -0.17 -6.58 6.02 -11.54 -0.07 -6.65 15 13 H 0.14 4.90 8.14 -2.39 -0.02 4.88 15 14 C -0.13 -3.80 9.95 30.58 0.30 -3.50 15 15 C -0.08 -2.47 5.36 -10.81 -0.06 -2.53 15 16 H 0.09 3.34 7.67 -2.39 -0.02 3.33 15 17 C -0.13 -3.12 5.85 -10.77 -0.06 -3.18 15 18 C -0.16 -2.90 10.25 30.60 0.31 -2.58 15 19 C -0.19 -4.06 10.25 30.62 0.31 -3.74 15 20 H 0.28 15.32 8.31 -92.71 -0.77 14.55 15 21 H 0.14 3.16 8.14 -2.39 -0.02 3.14 15 22 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 23 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 27 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 Total: -1.00 -74.55 248.26 6.36 -68.19 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.16 Total: 13.63 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 2.41 Total: -25.14 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: 0.47 Total: -48.79 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.55 6.36 -68.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388506327.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.666 kcal (2) G-P(sol) polarization free energy of solvation -74.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds