Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48504 * 109.46760 * 269.99977 * 3 2 1 5 5 H 1.48492 * 109.47163 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.46788 * 150.00394 * 3 2 1 7 7 C 1.38748 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00425 * 0.02562 * 7 2 1 9 9 O 1.34924 * 120.00022 * 179.97438 * 7 2 1 10 10 C 1.34315 * 116.99998 * 179.97438 * 9 7 2 11 11 O 1.21204 * 119.99887 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99728 * 180.02562 * 10 9 7 13 13 H 1.08996 * 115.55892 * 325.68801 * 12 10 9 14 14 C 1.52997 * 117.49828 * 111.38032 * 12 10 9 15 15 C 1.53002 * 117.49411 * 180.02562 * 12 10 9 16 16 H 1.08996 * 117.52128 * 359.97438 * 15 12 10 17 17 C 1.53001 * 117.49487 * 145.01957 * 15 12 10 18 18 C 1.53000 * 117.50223 * 300.01185 * 17 15 12 19 19 C 1.52997 * 117.49889 * 231.38446 * 17 15 12 20 20 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 21 21 H 1.08999 * 117.50076 * 359.97438 * 14 12 10 22 22 H 1.08996 * 117.51836 * 214.96933 * 14 12 10 23 23 H 1.09002 * 115.55911 * 85.69874 * 17 15 12 24 24 H 1.08990 * 117.49990 * 145.01974 * 18 17 15 25 25 H 1.09004 * 117.49237 * 359.97438 * 18 17 15 26 26 H 1.08999 * 117.49685 * 0.02562 * 19 17 15 27 27 H 1.08997 * 117.50044 * 214.98097 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5461 1.4401 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2017 -0.0011 10 6 3.9672 -2.3984 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4773 -0.0010 13 1 5.9842 -1.6908 -0.5553 14 6 6.1517 -3.0083 1.2627 15 6 6.1065 -3.8696 -0.0016 16 1 5.4357 -4.7287 -0.0015 17 6 7.4113 -4.0510 -0.7797 18 6 7.3848 -3.7592 -2.2814 19 6 7.4805 -5.2030 -1.7841 20 1 -0.4850 0.8401 0.0004 21 1 5.5103 -3.3002 2.0943 22 1 7.1110 -2.5715 1.5401 23 1 8.3222 -3.8029 -0.2348 24 1 8.2782 -3.3192 -2.7244 25 1 6.4376 -3.4384 -2.7150 26 1 6.5964 -5.8315 -1.8908 27 1 8.4369 -5.7129 -1.9000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388506329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = -34.004617 kcal Electronic energy + Delta-G solvation = -11962.967694 eV Core-core repulsion = 9687.903469 eV Total energy + Delta-G solvation = -2275.064225 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52435 -37.97814 -35.61198 -34.36954 -32.26838 -26.34772 -24.10911 -23.01313 -22.33121 -20.19226 -19.09716 -17.92369 -16.92263 -15.62732 -15.24550 -14.73373 -14.30379 -14.05470 -12.98162 -12.65877 -12.36405 -11.71464 -11.56849 -11.32530 -11.29879 -10.82805 -10.76318 -10.44915 -10.34330 -9.88693 -9.71028 -9.49988 -9.11825 -8.65641 -6.34775 -4.10208 3.05976 3.24314 3.29443 3.40618 3.67691 4.12679 4.16783 4.27664 4.78311 4.88771 4.99707 5.13651 5.19939 5.33618 5.45265 5.55974 5.65588 5.83435 5.90649 6.11297 6.17111 6.24310 6.43191 6.53764 7.76858 8.06318 8.65259 9.04014 9.73669 10.73819 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.056665 B = 0.008473 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.013196 B = 3303.640571 C = 3423.310380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.248 6.248 10 C 0.437 3.563 11 O -0.541 6.541 12 C -0.142 4.142 13 H 0.124 0.876 14 C -0.148 4.148 15 C -0.097 4.097 16 H 0.119 0.881 17 C -0.124 4.124 18 C -0.178 4.178 19 C -0.176 4.176 20 H 0.279 0.721 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 -3.774 -1.048 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.457 4.457 8 H 0.126 0.874 9 O -0.156 6.156 10 C 0.283 3.717 11 O -0.436 6.436 12 C -0.162 4.162 13 H 0.142 0.858 14 C -0.185 4.185 15 C -0.115 4.115 16 H 0.137 0.863 17 C -0.142 4.142 18 C -0.215 4.215 19 C -0.213 4.213 20 H 0.089 0.911 21 H 0.119 0.881 22 H 0.121 0.879 23 H 0.125 0.875 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.684 -3.888 -1.047 15.226 hybrid contribution 0.113 0.829 -0.053 0.839 sum 14.797 -3.059 -1.099 15.150 Atomic orbital electron populations 1.69615 1.05705 1.28362 1.47851 1.24543 0.95007 0.98672 0.95574 0.86213 0.80343 0.81458 0.78933 1.19857 1.20767 1.18334 1.20666 0.76233 0.96958 1.51885 0.87389 1.83507 1.23827 1.31257 1.77051 1.21957 0.89004 0.82499 0.78200 1.90581 1.66707 1.36454 1.49886 1.21634 0.90517 0.99419 1.04597 0.85790 1.23060 1.01742 1.02252 0.91451 1.21862 0.96454 0.94096 0.99082 0.86331 1.21754 0.97122 1.04158 0.91164 1.22997 1.03429 0.98776 0.96302 1.22981 1.03021 0.91491 1.03819 0.91066 0.88115 0.87938 0.87509 0.88904 0.88360 0.88570 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.41 13.96 55.48 0.77 -25.63 15 2 C 0.07 1.92 5.49 -17.53 -0.10 1.82 15 3 Si 0.91 21.83 28.62 -169.99 -4.86 16.96 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.26 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.38 -11.68 10.10 30.92 0.31 -11.37 15 8 H 0.11 3.63 7.09 -52.48 -0.37 3.26 15 9 O -0.25 -6.81 8.58 -20.73 -0.18 -6.98 15 10 C 0.44 10.73 7.69 36.01 0.28 11.01 15 11 O -0.54 -14.82 15.49 -19.05 -0.30 -15.12 15 12 C -0.14 -2.55 5.94 -91.77 -0.55 -3.10 15 13 H 0.12 2.00 8.14 -51.93 -0.42 1.58 15 14 C -0.15 -2.16 9.96 -26.71 -0.27 -2.43 15 15 C -0.10 -1.46 5.38 -90.59 -0.49 -1.95 15 16 H 0.12 2.00 7.67 -51.93 -0.40 1.60 15 17 C -0.12 -1.48 5.87 -90.62 -0.53 -2.01 15 18 C -0.18 -2.06 10.18 -26.73 -0.27 -2.34 15 19 C -0.18 -1.92 10.25 -26.73 -0.27 -2.20 15 20 H 0.28 7.66 8.31 -40.82 -0.34 7.32 15 21 H 0.10 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.10 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.11 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.09 0.91 8.14 -51.93 -0.42 0.48 15 25 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -32.71 247.03 -6.01 -38.72 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.29 Total: 0.89 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.88 Total: -12.56 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.77 Total: -25.63 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.47 Total: -22.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.71 -6.01 -38.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388506329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.718 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds