Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48504 * 109.46760 * 269.99977 * 3 2 1 5 5 H 1.48492 * 109.47163 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.46788 * 150.00394 * 3 2 1 7 7 C 1.38748 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00425 * 0.02562 * 7 2 1 9 9 O 1.34924 * 120.00022 * 179.97438 * 7 2 1 10 10 C 1.34315 * 116.99998 * 179.97438 * 9 7 2 11 11 O 1.21204 * 119.99887 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99728 * 180.02562 * 10 9 7 13 13 H 1.08996 * 115.55892 * 325.68801 * 12 10 9 14 14 C 1.52997 * 117.49828 * 111.38032 * 12 10 9 15 15 C 1.53002 * 117.49411 * 180.02562 * 12 10 9 16 16 H 1.08996 * 117.52128 * 359.97438 * 15 12 10 17 17 C 1.53001 * 117.49487 * 145.01957 * 15 12 10 18 18 C 1.53000 * 117.50223 * 300.01185 * 17 15 12 19 19 C 1.52997 * 117.49889 * 231.38446 * 17 15 12 20 20 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 21 21 H 1.08999 * 117.50076 * 359.97438 * 14 12 10 22 22 H 1.08996 * 117.51836 * 214.96933 * 14 12 10 23 23 H 1.09002 * 115.55911 * 85.69874 * 17 15 12 24 24 H 1.08990 * 117.49990 * 145.01974 * 18 17 15 25 25 H 1.09004 * 117.49237 * 359.97438 * 18 17 15 26 26 H 1.08999 * 117.49685 * 0.02562 * 19 17 15 27 27 H 1.08997 * 117.50044 * 214.98097 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5461 1.4401 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2017 -0.0011 10 6 3.9672 -2.3984 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4773 -0.0010 13 1 5.9842 -1.6908 -0.5553 14 6 6.1517 -3.0083 1.2627 15 6 6.1065 -3.8696 -0.0016 16 1 5.4357 -4.7287 -0.0015 17 6 7.4113 -4.0510 -0.7797 18 6 7.3848 -3.7592 -2.2814 19 6 7.4805 -5.2030 -1.7841 20 1 -0.4850 0.8401 0.0004 21 1 5.5103 -3.3002 2.0943 22 1 7.1110 -2.5715 1.5401 23 1 8.3222 -3.8029 -0.2348 24 1 8.2782 -3.3192 -2.7244 25 1 6.4376 -3.4384 -2.7150 26 1 6.5964 -5.8315 -1.8908 27 1 8.4369 -5.7129 -1.9000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388506329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = -54.336727 kcal Electronic energy + Delta-G solvation = -11963.849360 eV Core-core repulsion = 9687.903469 eV Total energy + Delta-G solvation = -2275.945891 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.39348 -39.33660 -37.41693 -35.79725 -34.53527 -28.39380 -25.71454 -24.31009 -23.21844 -21.63925 -20.58784 -20.14265 -18.77583 -17.15163 -16.78302 -16.50546 -16.01550 -15.51111 -14.65593 -14.44025 -14.03274 -13.37006 -13.29170 -12.54672 -12.45100 -12.33075 -12.27326 -11.92884 -11.87555 -11.81963 -11.19378 -10.92758 -10.86771 -10.60543 -8.58713 -6.46528 1.20203 1.31697 1.45785 1.54843 2.21031 2.28923 2.66028 2.89049 3.06234 3.66425 3.72702 3.92692 4.13759 4.21157 4.33009 4.41619 4.52202 4.77968 4.83399 4.98241 5.05462 5.19584 5.31255 5.36071 5.43905 5.85590 6.47902 6.77840 7.55513 8.54471 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.056665 B = 0.008473 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.013196 B = 3303.640571 C = 3423.310380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.250 1.250 7 C -0.414 4.414 8 H 0.053 0.947 9 O -0.254 6.254 10 C 0.434 3.566 11 O -0.581 6.581 12 C -0.165 4.165 13 H 0.150 0.850 14 C -0.122 4.122 15 C -0.088 4.088 16 H 0.091 0.909 17 C -0.123 4.123 18 C -0.182 4.182 19 C -0.173 4.173 20 H 0.291 0.709 21 H 0.088 0.912 22 H 0.149 0.851 23 H 0.139 0.861 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.488 -2.320 -0.891 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.490 4.490 8 H 0.071 0.929 9 O -0.163 6.163 10 C 0.282 3.718 11 O -0.478 6.478 12 C -0.184 4.184 13 H 0.167 0.833 14 C -0.159 4.159 15 C -0.106 4.106 16 H 0.109 0.891 17 C -0.141 4.141 18 C -0.219 4.219 19 C -0.210 4.210 20 H 0.101 0.899 21 H 0.107 0.893 22 H 0.167 0.833 23 H 0.157 0.843 24 H 0.136 0.864 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.097 -2.463 -0.891 18.286 hybrid contribution -1.004 0.195 -0.106 1.028 sum 17.093 -2.268 -0.996 17.272 Atomic orbital electron populations 1.69711 1.07639 1.30372 1.47907 1.25633 0.96028 1.02857 0.93890 0.85030 0.78990 0.75419 0.79955 1.18254 1.18673 1.17359 1.20345 0.77826 0.95790 1.55050 0.92859 1.83521 1.21920 1.32696 1.78161 1.23486 0.91792 0.81159 0.75353 1.90555 1.68482 1.37565 1.51159 1.21778 0.85499 1.02457 1.08687 0.83265 1.23284 1.02587 1.00189 0.89849 1.21916 0.97177 0.91524 0.99986 0.89088 1.21821 0.96129 1.05002 0.91129 1.23038 1.03372 0.99427 0.96020 1.23075 1.03803 0.91212 1.02870 0.89941 0.89342 0.83284 0.84293 0.86377 0.90816 0.90131 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.66 13.96 21.62 0.30 -56.36 15 2 C 0.02 0.95 5.49 84.87 0.47 1.41 15 3 Si 0.99 44.49 28.62 68.60 1.96 46.45 15 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 5 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.25 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.41 -26.60 10.10 67.94 0.69 -25.91 15 8 H 0.05 3.89 7.09 -2.91 -0.02 3.87 15 9 O -0.25 -14.27 8.58 14.78 0.13 -14.15 15 10 C 0.43 21.93 7.69 71.24 0.55 22.47 15 11 O -0.58 -33.73 15.49 20.79 0.32 -33.40 15 12 C -0.17 -5.71 5.94 -11.54 -0.07 -5.78 15 13 H 0.15 4.40 8.14 -2.39 -0.02 4.39 15 14 C -0.12 -3.23 9.96 30.61 0.30 -2.92 15 15 C -0.09 -2.51 5.38 -10.78 -0.06 -2.57 15 16 H 0.09 3.12 7.67 -2.39 -0.02 3.10 15 17 C -0.12 -2.52 5.87 -10.79 -0.06 -2.58 15 18 C -0.18 -3.73 10.18 30.60 0.31 -3.42 15 19 C -0.17 -3.33 10.25 30.60 0.31 -3.02 15 20 H 0.29 16.08 8.31 -92.71 -0.77 15.31 15 21 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.15 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.14 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.12 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.07 1.88 8.14 -2.38 -0.02 1.86 15 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.12 1.68 8.14 -2.39 -0.02 1.66 15 Total: -1.00 -75.70 247.03 6.31 -69.39 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.16 Total: 10.37 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 2.44 Total: -22.30 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.30 Total: -56.36 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: 0.45 Total: -47.55 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.96 Total: 46.45 kcal Total: -75.70 6.31 -69.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388506329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.056 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds