Wall clock time and date at job start Sun Mar 29 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00206 * 2 1 4 4 C 1.50691 * 109.47210 * 66.04711 * 3 2 1 5 5 H 1.08003 * 120.00311 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00064 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00241 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00063 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47248 * 89.99944 * 8 6 4 10 10 H 1.48497 * 109.47480 * 210.00030 * 8 6 4 11 11 H 1.48505 * 109.47063 * 330.00065 * 8 6 4 12 12 C 1.46901 * 111.00207 * 236.04380 * 2 1 3 13 13 C 1.50705 * 109.46863 * 293.95577 * 12 2 1 14 14 C 1.35450 * 126.77526 * 90.00125 * 13 12 2 15 15 C 1.41375 * 103.98779 * 179.97438 * 14 13 12 16 16 N 1.30174 * 106.39554 * 359.97438 * 15 14 13 17 17 O 1.20925 * 111.60250 * 0.02562 * 16 15 14 18 18 H 1.08997 * 109.47545 * 183.95818 * 1 2 3 19 19 H 1.09000 * 109.47154 * 303.96160 * 1 2 3 20 20 H 1.09003 * 109.47121 * 63.95300 * 1 2 3 21 21 H 1.09007 * 109.46753 * 186.04330 * 3 2 1 22 22 H 1.09001 * 109.47039 * 306.04018 * 3 2 1 23 23 H 0.97000 * 119.99990 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.47303 * 173.95684 * 12 2 1 25 25 H 1.09000 * 109.47115 * 53.95385 * 12 2 1 26 26 H 1.08002 * 128.01009 * 359.97438 * 14 13 12 27 27 H 1.07997 * 126.80869 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0739 1.5116 2.0485 6 6 2.0269 3.3494 1.5284 7 7 1.7136 3.9393 2.6613 8 14 3.0000 4.2761 0.2309 9 1 2.0634 4.9797 -0.6818 10 1 3.8864 5.2678 0.8912 11 1 3.8240 3.3174 -0.5485 12 6 1.9954 -0.7660 -1.1375 13 6 1.6368 -2.2205 -0.9727 14 6 0.5183 -2.8362 -1.4249 15 6 0.6756 -4.1785 -1.0099 16 7 1.8141 -4.2378 -0.3816 17 8 2.3622 -3.1603 -0.3506 18 1 -0.3634 -1.0252 0.0709 19 1 -0.3633 0.5741 0.8524 20 1 -0.3633 0.4513 -0.9233 21 1 3.0798 1.3443 -0.1082 22 1 1.5612 1.9273 -0.8310 23 1 1.9882 4.8555 2.8233 24 1 3.0797 -0.6612 -1.1755 25 1 1.5611 -0.3873 -2.0628 26 1 -0.3036 -2.4022 -1.9750 27 1 -0.0121 -4.9935 -1.1810 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393322793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:33 Heat of formation + Delta-G solvation = 49.711918 kcal Electronic energy + Delta-G solvation = -12130.027111 eV Core-core repulsion = 9890.885859 eV Total energy + Delta-G solvation = -2239.141252 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.79833 -38.57921 -34.94021 -34.57183 -33.03733 -29.89087 -28.43765 -25.59210 -24.29668 -22.61603 -21.80437 -19.06226 -18.48582 -18.03008 -16.60427 -16.21449 -16.02491 -15.83357 -14.76345 -14.33864 -14.27295 -13.90188 -13.33485 -13.10405 -12.64431 -12.56498 -12.18859 -12.04790 -11.77047 -11.48225 -11.36180 -10.76838 -10.37833 -9.10141 -8.25484 -6.29964 0.51840 1.39099 1.41119 1.42214 1.52295 2.19246 2.38022 3.07938 3.29643 3.54406 3.73546 4.16900 4.24551 4.38541 4.55427 4.64234 4.75413 4.78705 4.92748 5.02330 5.20532 5.21082 5.54231 5.93250 6.27428 6.59711 6.76713 7.32224 7.33604 8.91327 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.071544 B = 0.008042 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.271728 B = 3481.084119 C = 3565.466597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.552 5.552 3 C 0.172 3.828 4 C -0.520 4.520 5 H 0.034 0.966 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.242 1.242 12 C 0.125 3.875 13 C -0.015 4.015 14 C -0.229 4.229 15 C -0.003 4.003 16 N -0.404 5.404 17 O 0.072 5.928 18 H 0.071 0.929 19 H 0.047 0.953 20 H 0.036 0.964 21 H 0.038 0.962 22 H 0.002 0.998 23 H 0.266 0.734 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.197 0.803 27 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -10.323 -12.834 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.277 5.277 3 C 0.046 3.954 4 C -0.558 4.558 5 H 0.052 0.948 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.774 3.226 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.165 1.165 12 C -0.003 4.003 13 C -0.079 4.079 14 C -0.251 4.251 15 C -0.182 4.182 16 N -0.111 5.111 17 O 0.011 5.989 18 H 0.089 0.911 19 H 0.066 0.934 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.019 0.981 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.214 0.786 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.985 -11.365 -11.695 16.337 hybrid contribution -0.615 1.446 -0.865 1.794 sum -1.601 -9.919 -12.559 16.084 Atomic orbital electron populations 1.22264 0.86972 1.01229 1.00621 1.61744 1.08958 1.15459 1.41589 1.19994 0.95772 0.84672 0.95005 1.21265 1.35010 0.97523 1.02009 0.94795 1.25896 0.96960 0.98429 0.97841 1.70064 1.48615 1.13888 1.26609 0.85666 0.79178 0.78727 0.79065 1.19036 1.21205 1.16491 1.20624 1.02518 0.83422 0.93751 1.24693 0.93181 0.93829 0.96188 1.22945 1.00608 0.93540 1.07972 1.25638 0.95350 0.99488 0.97691 1.73881 1.12262 1.03734 1.21258 1.84793 1.42727 1.13161 1.58257 0.91053 0.93419 0.94521 0.94438 0.98081 0.92463 0.88333 0.89065 0.78560 0.76005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 9.11 127.69 1.16 2.48 15 2 N -0.55 -21.59 4.74 -931.66 -4.42 -26.01 15 3 C 0.17 7.74 3.79 85.55 0.32 8.07 15 4 C -0.52 -29.47 9.01 25.60 0.23 -29.24 15 5 H 0.03 2.18 7.37 -2.91 -0.02 2.16 15 6 C 0.01 0.33 5.47 84.65 0.46 0.79 15 7 N -0.95 -59.12 13.96 21.45 0.30 -58.82 15 8 Si 0.95 42.38 27.47 68.60 1.88 44.26 15 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 11 H -0.24 -9.74 6.54 99.48 0.65 -9.09 15 12 C 0.13 3.65 5.53 85.56 0.47 4.12 15 13 C -0.01 -0.42 6.36 25.04 0.16 -0.26 15 14 C -0.23 -5.13 9.76 22.40 0.22 -4.91 15 15 C 0.00 -0.08 12.17 85.71 1.04 0.96 15 16 N -0.40 -12.32 12.07 -59.27 -0.72 -13.03 15 17 O 0.07 2.35 11.20 71.69 0.80 3.15 15 18 H 0.07 2.19 6.34 -2.39 -0.02 2.18 15 19 H 0.05 2.02 6.76 -2.39 -0.02 2.01 15 20 H 0.04 1.13 8.14 -2.39 -0.02 1.11 15 21 H 0.04 1.65 6.99 -2.38 -0.02 1.64 15 22 H 0.00 0.06 7.55 -2.39 -0.02 0.05 15 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 24 H 0.10 2.76 7.93 -2.39 -0.02 2.74 15 25 H 0.09 2.15 8.12 -2.39 -0.02 2.13 15 26 H 0.20 3.13 8.06 -2.91 -0.02 3.10 15 27 H 0.22 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -68.23 235.01 3.03 -65.20 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.10 Total: 3.22 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.07 Total: -17.97 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.84 Total: -97.86 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.80 Total: 3.15 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -68.23 3.03 -65.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393322793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.916 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds