Wall clock time and date at job start Sun Mar 29 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99625 * 3 2 1 6 6 H 1.48491 * 109.47312 * 59.99873 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99867 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00166 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00142 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.46957 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 11 16 16 C 1.53003 * 117.49663 * 243.74292 * 15 14 13 17 17 C 1.53002 * 117.49643 * 175.08260 * 15 14 13 18 18 H 0.97002 * 120.00081 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 20 20 H 1.09004 * 109.46994 * 300.00018 * 9 7 2 21 21 H 0.96999 * 120.00085 * 0.02562 * 10 9 7 22 22 H 1.08993 * 109.46700 * 59.99973 * 13 11 10 23 23 H 1.09000 * 109.46974 * 300.00347 * 13 11 10 24 24 H 1.08993 * 109.47839 * 60.00178 * 14 13 11 25 25 H 1.09000 * 109.47160 * 299.99740 * 14 13 11 26 26 H 1.09002 * 115.55153 * 29.41498 * 15 14 13 27 27 H 1.08998 * 117.49856 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49861 * 145.02337 * 16 15 14 29 29 H 1.08993 * 117.50251 * 214.97577 * 17 15 14 30 30 H 1.09003 * 117.49715 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 6 1.9681 -7.3538 0.0015 15 6 2.9625 -8.5167 0.0028 16 6 2.9662 -9.4442 -1.2141 17 6 2.3937 -9.9323 0.1192 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1567 -3.4353 0.0009 22 1 3.3597 -5.9706 0.8916 23 1 3.3599 -5.9714 -0.8883 24 1 1.3419 -7.4118 -0.8886 25 1 1.3411 -7.4114 0.8913 26 1 3.9187 -8.3171 0.4864 27 1 2.2606 -9.2257 -2.0156 28 1 3.9248 -9.8552 -1.5307 29 1 2.9759 -10.6642 0.6790 30 1 1.3112 -10.0351 0.1944 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393330717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:37 Heat of formation + Delta-G solvation = -38.361516 kcal Electronic energy + Delta-G solvation = -11875.799976 eV Core-core repulsion = 9670.954006 eV Total energy + Delta-G solvation = -2204.845970 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92173 -37.40247 -34.16311 -32.37042 -31.81253 -27.44821 -24.69763 -22.45789 -22.19742 -20.34495 -19.54006 -16.99645 -15.81249 -15.56308 -15.15260 -14.92397 -14.25698 -13.89562 -13.27879 -12.68173 -12.01285 -11.94328 -11.79852 -11.59083 -11.18737 -11.06030 -10.92895 -10.87266 -10.33134 -10.29008 -9.86369 -9.36422 -8.96767 -8.72532 -7.84373 -6.15673 -4.22456 3.24053 3.31037 3.34248 3.44483 3.73937 4.12440 4.37692 4.76423 4.87553 4.90750 5.19951 5.20515 5.44124 5.54934 5.57164 5.63843 5.85670 5.94876 6.04182 6.07838 6.27474 6.47691 7.33641 7.48369 7.54060 7.69045 7.98819 8.67115 8.80411 9.15559 9.44541 10.94682 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.102408 B = 0.005520 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.349674 B = 5071.218011 C = 5250.109817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.715 5.715 11 C 0.495 3.505 12 O -0.560 6.560 13 C -0.138 4.138 14 C -0.073 4.073 15 C -0.151 4.151 16 C -0.183 4.183 17 C -0.183 4.183 18 H 0.265 0.735 19 H 0.026 0.974 20 H 0.026 0.974 21 H 0.390 0.610 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.952 -13.491 -0.349 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.440 6.440 13 C -0.178 4.178 14 C -0.110 4.110 15 C -0.169 4.169 16 C -0.220 4.220 17 C -0.220 4.220 18 H 0.075 0.925 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.223 0.777 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.919 -13.486 -0.351 15.162 hybrid contribution 0.919 1.060 -0.006 1.403 sum 7.839 -12.426 -0.357 14.696 Atomic orbital electron populations 1.69986 1.06130 1.27168 1.49066 1.24962 0.94909 0.99475 0.94720 0.86359 0.79831 0.82964 0.77747 1.19631 1.20793 1.20798 1.21281 0.93303 0.90498 1.53001 0.91850 1.19100 0.88411 0.82133 0.97674 1.46487 1.11048 1.06314 1.72444 1.20583 0.89592 0.84535 0.77275 1.90646 1.17154 1.85045 1.51136 1.21648 0.98624 0.93814 1.03721 1.20899 0.96134 0.90528 1.03484 1.22403 1.00913 0.91293 1.02290 1.23053 1.02619 1.04478 0.91882 1.22964 1.01082 0.97322 1.00672 0.92515 0.95619 0.95601 0.77720 0.89527 0.89473 0.91152 0.90909 0.87861 0.88752 0.89140 0.89089 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 10 N -0.71 -15.33 5.55 -61.47 -0.34 -15.68 16 11 C 0.49 10.02 7.83 -10.98 -0.09 9.94 16 12 O -0.56 -13.74 15.98 5.56 0.09 -13.65 16 13 C -0.14 -1.94 5.66 -27.88 -0.16 -2.10 16 14 C -0.07 -0.99 4.78 -26.73 -0.13 -1.12 16 15 C -0.15 -1.63 5.73 -90.61 -0.52 -2.14 16 16 C -0.18 -1.80 10.18 -26.69 -0.27 -2.07 16 17 C -0.18 -1.79 10.26 -26.69 -0.27 -2.07 16 18 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.39 7.13 8.32 -40.82 -0.34 6.79 16 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 25 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 26 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 27 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 263.54 15.07 3.97 3.97 Total: -1.00 -31.84 263.54 -6.94 -38.79 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.50 Total: 2.74 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.88 Total: -6.47 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.40 Total: -41.33 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.84 -6.94 -38.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393330717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.425 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds