Wall clock time and date at job start Sun Mar 29 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99625 * 3 2 1 6 6 H 1.48491 * 109.47312 * 59.99873 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99867 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00166 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00142 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.46957 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 11 16 16 C 1.53003 * 117.49663 * 243.74292 * 15 14 13 17 17 C 1.53002 * 117.49643 * 175.08260 * 15 14 13 18 18 H 0.97002 * 120.00081 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 20 20 H 1.09004 * 109.46994 * 300.00018 * 9 7 2 21 21 H 0.96999 * 120.00085 * 0.02562 * 10 9 7 22 22 H 1.08993 * 109.46700 * 59.99973 * 13 11 10 23 23 H 1.09000 * 109.46974 * 300.00347 * 13 11 10 24 24 H 1.08993 * 109.47839 * 60.00178 * 14 13 11 25 25 H 1.09000 * 109.47160 * 299.99740 * 14 13 11 26 26 H 1.09002 * 115.55153 * 29.41498 * 15 14 13 27 27 H 1.08998 * 117.49856 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49861 * 145.02337 * 16 15 14 29 29 H 1.08993 * 117.50251 * 214.97577 * 17 15 14 30 30 H 1.09003 * 117.49715 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 6 1.9681 -7.3538 0.0015 15 6 2.9625 -8.5167 0.0028 16 6 2.9662 -9.4442 -1.2141 17 6 2.3937 -9.9323 0.1192 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1567 -3.4353 0.0009 22 1 3.3597 -5.9706 0.8916 23 1 3.3599 -5.9714 -0.8883 24 1 1.3419 -7.4118 -0.8886 25 1 1.3411 -7.4114 0.8913 26 1 3.9187 -8.3171 0.4864 27 1 2.2606 -9.2257 -2.0156 28 1 3.9248 -9.8552 -1.5307 29 1 2.9759 -10.6642 0.6790 30 1 1.3112 -10.0351 0.1944 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393330717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:37 Heat of formation + Delta-G solvation = -60.104208 kcal Electronic energy + Delta-G solvation = -11876.742810 eV Core-core repulsion = 9670.954006 eV Total energy + Delta-G solvation = -2205.788804 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57283 -38.34582 -36.14971 -34.36273 -33.09069 -29.44198 -26.17878 -24.11494 -23.17399 -21.38330 -21.16513 -18.87757 -17.42591 -17.10206 -16.73987 -16.27885 -15.89801 -15.10284 -14.83535 -14.31577 -13.96252 -13.73395 -13.13047 -12.80297 -12.75578 -12.40009 -12.22134 -12.20013 -12.08958 -11.46312 -11.17427 -10.82760 -10.77020 -10.65058 -9.82216 -8.29963 -6.46899 1.43227 1.44554 1.58180 1.79953 2.32928 2.62172 2.96864 3.05027 3.79540 3.88923 4.08692 4.14482 4.35936 4.47115 4.65539 4.79650 4.83927 5.07741 5.09578 5.13357 5.18802 5.23466 5.32020 5.46082 5.50883 5.70617 5.84638 6.65011 6.92858 7.23041 7.52349 8.82715 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.102408 B = 0.005520 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.349674 B = 5071.218011 C = 5250.109817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.263 3.737 10 N -0.709 5.709 11 C 0.489 3.511 12 O -0.610 6.610 13 C -0.121 4.121 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.180 4.180 17 C -0.184 4.184 18 H 0.269 0.731 19 H -0.015 1.015 20 H -0.014 1.014 21 H 0.410 0.590 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.946 -13.746 -0.312 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.140 3.860 10 N -0.359 5.359 11 C 0.277 3.723 12 O -0.493 6.493 13 C -0.160 4.160 14 C -0.109 4.109 15 C -0.173 4.173 16 C -0.217 4.217 17 C -0.221 4.221 18 H 0.078 0.922 19 H 0.003 0.997 20 H 0.003 0.997 21 H 0.245 0.755 22 H 0.137 0.863 23 H 0.135 0.865 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.964 -13.775 -0.314 17.004 hybrid contribution -0.083 1.067 -0.022 1.070 sum 9.881 -12.708 -0.336 16.101 Atomic orbital electron populations 1.70149 1.08376 1.28534 1.50086 1.26104 0.95779 1.04037 0.93802 0.85078 0.79100 0.77144 0.77684 1.17519 1.20437 1.20437 1.21669 0.94362 0.90551 1.52774 0.89684 1.18549 0.88868 0.84690 0.93917 1.46250 1.11180 1.05687 1.72802 1.21784 0.90070 0.85301 0.75148 1.90625 1.19959 1.85724 1.52957 1.21657 0.97224 0.90526 1.06597 1.20831 0.96572 0.91793 1.01680 1.22320 1.00882 0.90416 1.03648 1.23129 1.03340 1.03743 0.91474 1.23053 1.00970 0.97049 1.00985 0.92241 0.99695 0.99654 0.75452 0.86261 0.86508 0.93172 0.92811 0.85810 0.89565 0.87220 0.87247 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.26 14.76 5.43 85.63 0.46 15.23 16 10 N -0.71 -30.43 5.55 -466.78 -2.59 -33.02 16 11 C 0.49 19.83 7.83 87.66 0.69 20.52 16 12 O -0.61 -31.16 15.98 -3.03 -0.05 -31.21 16 13 C -0.12 -3.12 5.66 29.85 0.17 -2.95 16 14 C -0.07 -1.86 4.78 30.60 0.15 -1.71 16 15 C -0.15 -2.93 5.73 -10.79 -0.06 -2.99 16 16 C -0.18 -3.09 10.18 30.62 0.31 -2.78 16 17 C -0.18 -3.21 10.26 30.62 0.31 -2.89 16 18 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 19 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 20 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 21 H 0.41 14.24 8.32 -92.71 -0.77 13.47 16 22 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.05 1.49 7.83 -2.39 -0.02 1.48 16 25 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 26 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 27 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.80 263.54 2.75 -69.06 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.34 Total: 14.70 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 2.73 Total: -7.35 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.30 Total: -89.71 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.80 2.75 -69.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393330717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.953 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds