Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.56256 * 2 1 4 4 C 1.53000 * 117.50045 * 214.30647 * 2 1 3 5 5 C 1.52994 * 60.00086 * 252.51318 * 4 2 1 6 6 H 1.09000 * 117.49935 * 107.51373 * 5 4 2 7 7 C 1.53006 * 117.49890 * 252.50894 * 5 4 2 8 8 N 1.46502 * 109.47247 * 243.61216 * 7 5 4 9 9 C 1.36944 * 119.99524 * 270.00211 * 8 7 5 10 10 H 1.08003 * 119.99400 * 188.92352 * 9 8 7 11 11 C 1.38808 * 120.00038 * 8.92567 * 9 8 7 12 12 N 1.31612 * 120.00270 * 24.41426 * 11 9 8 13 13 Si 1.86801 * 119.99604 * 204.41144 * 11 9 8 14 14 H 1.48496 * 109.47453 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46899 * 120.00232 * 13 11 9 16 16 H 1.48495 * 109.47266 * 240.00016 * 13 11 9 17 17 C 1.46495 * 120.00323 * 89.99869 * 8 7 5 18 18 C 1.52994 * 117.50085 * 166.41044 * 17 8 7 19 19 C 1.53002 * 117.50094 * 235.07467 * 17 8 7 20 20 H 1.09000 * 109.47321 * 274.30814 * 1 2 3 21 21 H 1.08999 * 109.46907 * 34.31209 * 1 2 3 22 22 H 1.08997 * 109.46778 * 154.31067 * 1 2 3 23 23 H 1.09002 * 117.49731 * 145.02433 * 4 2 1 24 24 H 1.08998 * 117.49698 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.46788 * 123.61167 * 7 5 4 26 26 H 1.08997 * 109.47172 * 3.60905 * 7 5 4 27 27 H 0.97000 * 119.99912 * 175.42552 * 12 11 9 28 28 H 1.09002 * 115.54828 * 20.74221 * 17 8 7 29 29 H 1.09001 * 117.50222 * 215.00410 * 18 17 8 30 30 H 1.09004 * 117.49964 * 0.02562 * 18 17 8 31 31 H 1.08998 * 117.49901 * 359.97014 * 19 17 8 32 32 H 1.08996 * 117.49719 * 144.97289 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7650 6 1 1.6115 -1.8587 1.2683 7 6 3.5490 -0.7759 1.4716 8 7 4.0083 -1.9344 2.2417 9 6 3.6145 -2.0907 3.5439 10 1 4.0631 -2.8600 4.1550 11 6 2.6387 -1.2606 4.0783 12 7 1.7663 -0.6753 3.2855 13 14 2.5639 -0.9743 5.9227 14 1 3.6483 -1.7409 6.5871 15 1 2.7361 0.4732 6.2063 16 1 1.2480 -1.4271 6.4409 17 6 4.8889 -2.9257 1.6187 18 6 5.5881 -3.9275 2.5397 19 6 4.4361 -4.3870 1.6425 20 1 -0.3634 0.0772 1.0247 21 1 -0.3633 0.8488 -0.5793 22 1 -0.3633 -0.9261 -0.4455 23 1 3.1716 -0.8752 -1.2681 24 1 1.6113 -1.8583 -1.2685 25 1 3.3890 0.0670 2.1439 26 1 4.3023 -0.5110 0.7296 27 1 1.0445 -0.1488 3.6633 28 1 5.4360 -2.5826 0.7406 29 1 6.5952 -4.2435 2.2676 30 1 5.3926 -3.8493 3.6093 31 1 3.4833 -4.6109 2.1221 32 1 4.6850 -5.0051 0.7799 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393332065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = 75.455793 kcal Electronic energy + Delta-G solvation = -12748.818025 eV Core-core repulsion = 10712.052117 eV Total energy + Delta-G solvation = -2036.765908 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.54977 -36.24548 -33.27396 -30.34450 -27.97320 -25.58085 -23.43740 -21.39134 -20.19236 -19.79385 -19.12139 -16.32335 -15.56815 -14.37556 -14.01284 -13.77000 -13.40157 -12.53503 -12.31453 -11.82789 -11.66378 -11.24837 -10.84919 -10.75687 -10.73310 -10.61351 -10.40214 -10.07335 -9.69059 -9.60711 -9.37709 -8.92867 -8.52382 -8.20646 -6.72841 -5.73965 -3.04665 3.38470 3.47881 3.49586 4.47746 4.90553 4.93503 5.26894 5.44063 5.71404 5.89245 5.95343 6.02367 6.12487 6.14741 6.28909 6.46240 6.48829 6.54499 6.58407 6.68794 6.71877 6.81787 6.97122 7.10622 7.13204 7.34276 7.56184 7.82801 7.93562 8.36513 9.23909 9.88813 10.32729 11.28809 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.017720 C = 0.010895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.844195 B = 1579.760075 C = 2569.471706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.159 4.159 3 H 0.084 0.916 4 C -0.222 4.222 5 C -0.067 4.067 6 H 0.111 0.889 7 C 0.206 3.794 8 N -0.562 5.562 9 C -0.260 4.260 10 H 0.079 0.921 11 C 0.002 3.998 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.293 1.293 17 C 0.134 3.866 18 C -0.209 4.209 19 C -0.227 4.227 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.012 0.988 27 H 0.252 0.748 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -0.581 -4.761 5.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 H 0.102 0.898 4 C -0.259 4.259 5 C -0.088 4.088 6 H 0.129 0.871 7 C 0.081 3.919 8 N -0.278 5.278 9 C -0.388 4.388 10 H 0.097 0.903 11 C -0.196 4.196 12 N -0.533 5.533 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.216 1.216 16 H -0.221 1.221 17 C 0.024 3.976 18 C -0.248 4.248 19 C -0.268 4.268 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.477 -0.357 -4.688 4.928 hybrid contribution -0.305 -0.008 0.916 0.965 sum 1.172 -0.364 -3.772 3.967 Atomic orbital electron populations 1.21198 0.94350 0.99605 1.01410 1.22027 0.94175 0.94259 1.07335 0.89760 1.23304 1.01410 1.02306 0.98913 1.23014 0.99745 0.98653 0.87373 0.87108 1.20351 0.89367 0.90081 0.92137 1.43801 1.52465 1.21450 1.10060 1.19289 1.18071 1.15663 0.85806 0.90346 1.24776 0.96643 1.00708 0.97501 1.70212 1.13802 1.36951 1.32342 0.86305 0.77211 0.77799 0.86010 1.20563 1.21647 1.22082 1.20956 0.95898 0.84895 0.95896 1.23162 0.95355 1.07494 0.98793 1.23375 0.98751 1.03094 1.01586 0.91995 0.94221 0.93870 0.90798 0.90902 0.90017 0.96975 0.93756 0.89007 0.90667 0.88740 0.89349 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.19 37.16 0.38 -1.57 16 2 C -0.16 -3.14 6.13 -90.62 -0.56 -3.69 16 3 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.22 -4.25 9.82 -26.73 -0.26 -4.51 16 5 C -0.07 -1.51 4.03 -90.62 -0.36 -1.88 16 6 H 0.11 2.90 7.41 -51.93 -0.39 2.52 16 7 C 0.21 4.86 5.25 -4.04 -0.02 4.84 16 8 N -0.56 -13.82 2.89 -165.66 -0.48 -14.29 16 9 C -0.26 -6.91 9.18 -15.06 -0.14 -7.04 16 10 H 0.08 2.09 5.81 -52.48 -0.31 1.78 16 11 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 12 N -0.89 -23.97 8.71 55.49 0.48 -23.48 16 13 Si 0.90 21.43 29.62 -169.99 -5.04 16.40 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.13 2.85 6.61 -67.94 -0.45 2.40 16 18 C -0.21 -4.07 9.84 -26.69 -0.26 -4.33 16 19 C -0.23 -4.51 10.18 -26.69 -0.27 -4.78 16 20 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 23 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 24 H 0.07 1.33 8.05 -51.93 -0.42 0.92 16 25 H 0.08 2.14 6.31 -51.93 -0.33 1.81 16 26 H 0.01 0.26 7.77 -51.93 -0.40 -0.14 16 27 H 0.25 6.70 8.32 -40.82 -0.34 6.37 16 28 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.99 6.14 -51.93 -0.32 1.67 16 31 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 261.37 15.07 3.94 3.94 Total: -1.00 -26.53 261.37 -8.20 -34.73 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.08 Total: 3.30 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.03 Total: -20.59 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.00 Total: -37.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.40 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.53 -8.20 -34.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393332065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.189 kcal (2) G-P(sol) polarization free energy of solvation -26.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds