Wall clock time and date at job start Sun Mar 29 2020 21:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 115.56156 * 2 1 4 4 C 1.53071 * 117.51767 * 214.29599 * 2 1 3 5 5 C 1.53000 * 117.49818 * 145.68431 * 2 1 3 6 6 H 1.09003 * 117.50120 * 215.00659 * 5 2 1 7 7 C 1.52997 * 117.49921 * 0.02562 * 5 2 1 8 8 N 1.46498 * 109.47319 * 184.91068 * 7 5 2 9 9 C 1.36945 * 119.99937 * 89.99982 * 8 7 5 10 10 H 1.07997 * 119.99651 * 157.75043 * 9 8 7 11 11 C 1.38810 * 119.99637 * 337.74868 * 9 8 7 12 12 N 1.31620 * 120.00543 * 6.19178 * 11 9 8 13 13 Si 1.86805 * 119.99573 * 186.18873 * 11 9 8 14 14 H 1.48501 * 109.46962 * 60.00523 * 13 11 9 15 15 H 1.48498 * 109.46794 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47227 * 300.00429 * 13 11 9 17 17 C 1.46507 * 120.00226 * 270.00321 * 8 7 5 18 18 C 1.52995 * 117.49852 * 194.21536 * 17 8 7 19 19 C 1.52995 * 117.50144 * 125.58598 * 17 8 7 20 20 H 1.09000 * 109.47623 * 274.31603 * 1 2 3 21 21 H 1.09004 * 109.47217 * 34.31387 * 1 2 3 22 22 H 1.08999 * 109.46972 * 154.31068 * 1 2 3 23 23 H 1.09000 * 117.50157 * 145.03812 * 4 2 1 24 24 H 1.09004 * 117.53251 * 359.97438 * 4 2 1 25 25 H 1.09000 * 109.46903 * 64.91291 * 7 5 2 26 26 H 1.08998 * 109.47185 * 304.90943 * 7 5 2 27 27 H 0.96994 * 120.00109 * 174.96784 * 12 11 9 28 28 H 1.09000 * 115.54482 * 339.91544 * 17 8 7 29 29 H 1.09004 * 117.50126 * 359.97438 * 18 17 8 30 30 H 1.08994 * 117.50328 * 145.02095 * 18 17 8 31 31 H 1.08994 * 117.49945 * 214.97963 * 19 17 8 32 32 H 1.09005 * 117.49868 * 0.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1215 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1712 -0.8750 1.2688 7 6 1.3587 -2.1564 1.4711 8 7 2.2058 -3.0721 2.2394 9 6 2.5180 -2.7860 3.5417 10 1 2.8173 -3.5784 4.2117 11 6 2.4499 -1.4777 4.0004 12 7 1.9698 -0.5313 3.2217 13 14 3.0398 -1.0601 5.7230 14 1 4.4767 -1.4114 5.8529 15 1 2.8610 0.3935 5.9685 16 1 2.2499 -1.8304 6.7170 17 6 2.7189 -4.2938 1.6145 18 6 3.3077 -5.3645 2.5351 19 6 4.2309 -4.5243 1.6503 20 1 -0.3634 0.0773 1.0247 21 1 -0.3634 0.8488 -0.5793 22 1 -0.3633 -0.9261 -0.4455 23 1 3.1724 -0.8757 -1.2679 24 1 1.6127 -1.8599 -1.2680 25 1 0.7938 -2.7204 0.7289 26 1 0.6683 -1.6488 2.1446 27 1 1.8541 0.3680 3.5662 28 1 2.1791 -4.6316 0.7298 29 1 3.3137 -5.1599 3.6057 30 1 3.1554 -6.4072 2.2563 31 1 4.6859 -5.0142 0.7895 32 1 4.8440 -3.7672 2.1393 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393332070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:40 Heat of formation + Delta-G solvation = 76.623630 kcal Electronic energy + Delta-G solvation = -12840.510225 eV Core-core repulsion = 10803.794958 eV Total energy + Delta-G solvation = -2036.715267 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.59483 -36.23778 -33.22188 -30.20511 -27.69396 -25.92122 -23.44027 -21.37919 -20.45833 -19.83197 -18.40516 -16.33685 -15.61787 -14.52923 -14.25529 -13.74010 -13.09891 -12.58750 -12.14830 -12.01020 -11.48099 -11.06752 -10.86164 -10.76024 -10.68127 -10.63119 -10.46271 -10.06358 -9.71534 -9.54575 -9.34894 -9.00379 -8.48164 -8.16577 -6.59472 -5.67050 -3.17535 3.38549 3.44384 3.45458 4.46329 4.95065 4.96624 5.29666 5.51477 5.74167 5.91240 5.97238 6.05404 6.15108 6.18690 6.30359 6.47521 6.52428 6.56181 6.61283 6.72446 6.79293 6.85498 7.00125 7.14287 7.15926 7.43841 7.69311 7.86039 7.90244 8.45551 9.28318 9.88717 10.35362 11.29454 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.017774 C = 0.011404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.475893 B = 1574.933698 C = 2454.646752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.157 4.157 3 H 0.081 0.919 4 C -0.226 4.226 5 C -0.062 4.062 6 H 0.102 0.898 7 C 0.210 3.790 8 N -0.565 5.565 9 C -0.256 4.256 10 H 0.074 0.926 11 C 0.004 3.996 12 N -0.896 5.896 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.285 1.285 17 C 0.134 3.866 18 C -0.210 4.210 19 C -0.224 4.224 20 H 0.062 0.938 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.004 0.996 26 H 0.096 0.904 27 H 0.253 0.747 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -2.012 -4.439 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 H 0.099 0.901 4 C -0.263 4.263 5 C -0.083 4.083 6 H 0.120 0.880 7 C 0.085 3.915 8 N -0.281 5.281 9 C -0.385 4.385 10 H 0.092 0.908 11 C -0.194 4.194 12 N -0.541 5.541 13 Si 0.734 3.266 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.023 3.977 18 C -0.249 4.249 19 C -0.266 4.266 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.022 0.978 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.835 -1.769 -4.387 4.803 hybrid contribution 0.623 0.388 0.859 1.130 sum -0.212 -1.381 -3.528 3.794 Atomic orbital electron populations 1.21181 0.94265 0.99702 1.01478 1.21998 0.94313 0.94017 1.07296 0.90077 1.23301 1.01292 1.02561 0.99183 1.22946 1.01370 0.96892 0.87061 0.87984 1.20380 0.91185 0.87852 0.92059 1.43655 1.54652 1.20197 1.09593 1.19222 1.41013 0.91752 0.86497 0.90822 1.25066 1.00554 0.95593 0.98200 1.70132 1.48254 1.02011 1.33706 0.86345 0.78981 0.77105 0.84168 1.21177 1.21646 1.21181 1.21028 0.91378 0.89585 0.95717 1.23145 1.07731 0.95189 0.98839 1.23326 0.97801 1.03839 1.01608 0.91862 0.94287 0.93630 0.91177 0.90640 0.97821 0.88653 0.93650 0.89112 0.88843 0.90753 0.91125 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.19 37.15 0.34 -1.61 16 2 C -0.16 -3.14 6.41 -90.59 -0.58 -3.72 16 3 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 4 C -0.23 -4.40 9.83 -26.69 -0.26 -4.66 16 5 C -0.06 -1.41 4.19 -90.62 -0.38 -1.79 16 6 H 0.10 2.70 7.43 -51.93 -0.39 2.31 16 7 C 0.21 4.98 4.32 -4.04 -0.02 4.96 16 8 N -0.56 -13.98 2.89 -165.67 -0.48 -14.46 16 9 C -0.26 -6.81 9.10 -15.06 -0.14 -6.94 16 10 H 0.07 1.95 5.83 -52.49 -0.31 1.64 16 11 C 0.00 0.10 5.40 -17.43 -0.09 0.01 16 12 N -0.90 -24.08 7.94 55.49 0.44 -23.64 16 13 Si 0.90 21.48 29.56 -169.99 -5.03 16.45 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 C 0.13 2.87 6.62 -67.93 -0.45 2.42 16 18 C -0.21 -4.12 9.86 -26.73 -0.26 -4.38 16 19 C -0.22 -4.51 10.17 -26.73 -0.27 -4.78 16 20 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.77 7.90 -51.93 -0.41 0.36 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.08 1.39 7.94 -51.93 -0.41 0.98 16 25 H 0.00 0.08 7.77 -51.93 -0.40 -0.32 16 26 H 0.10 2.50 5.93 -51.93 -0.31 2.19 16 27 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 28 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 29 H 0.09 1.97 6.16 -51.93 -0.32 1.65 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 258.87 15.07 3.90 3.90 Total: -1.00 -26.45 258.87 -8.32 -34.77 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.04 Total: 3.48 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -2.11 Total: -20.50 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.04 Total: -38.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.45 -8.32 -34.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393332070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.396 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds