Wall clock time and date at job start Sun Mar 29 2020 21:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99673 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.67320 * 31.76203 * 12 11 10 14 14 C 1.54896 * 110.75246 * 268.32383 * 12 11 10 15 15 C 1.54260 * 104.19582 * 203.74495 * 14 12 11 16 16 H 1.09000 * 117.76415 * 163.97553 * 15 14 12 17 17 C 1.53003 * 118.19995 * 319.43480 * 15 14 12 18 18 C 1.52994 * 60.37873 * 93.61765 * 17 15 14 19 19 H 1.08994 * 119.75827 * 111.12660 * 18 17 15 20 20 C 1.54271 * 118.19578 * 266.38414 * 18 17 15 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.00897 * 111.00027 * 303.95091 * 11 10 9 27 27 H 1.08998 * 110.48402 * 322.42477 * 14 12 11 28 28 H 1.09001 * 110.48049 * 85.06580 * 14 12 11 29 29 H 1.09003 * 117.46006 * 346.01299 * 17 15 14 30 30 H 1.09000 * 117.46147 * 201.21924 * 17 15 14 31 31 H 1.08996 * 110.48650 * 281.89023 * 20 18 17 32 32 H 1.09005 * 110.59885 * 159.30787 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0006 13 1 3.3511 -5.8292 0.5369 14 6 2.7491 -6.5289 -1.4482 15 6 3.1742 -8.0043 -1.2991 16 1 3.1898 -8.6214 -2.1975 17 6 4.0650 -8.3838 -0.1145 18 6 2.5456 -8.5128 0.0101 19 1 2.0900 -9.5009 0.0737 20 6 1.7605 -7.3286 0.6110 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 0.8743 -4.9846 0.7800 27 1 1.8600 -6.4494 -2.0738 28 1 3.5641 -5.9372 -1.8649 29 1 4.5473 -7.5732 0.4318 30 1 4.6428 -9.3046 -0.1948 31 1 1.8540 -7.3206 1.6969 32 1 0.7111 -7.3770 0.3198 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397750188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:27 Heat of formation + Delta-G solvation = 9.384140 kcal Electronic energy + Delta-G solvation = -11998.878521 eV Core-core repulsion = 9959.247530 eV Total energy + Delta-G solvation = -2039.630990 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.61757 -35.41199 -32.90918 -30.45334 -28.15309 -27.70907 -24.08714 -22.42328 -20.65528 -19.53104 -19.20326 -16.52198 -15.95557 -15.15041 -14.62580 -14.26629 -13.56883 -13.08026 -12.93683 -12.75019 -12.09009 -11.54355 -11.28423 -11.24971 -10.98534 -10.87628 -10.58413 -10.47741 -10.05364 -9.95872 -9.48541 -9.32065 -9.13399 -8.33339 -7.79596 -5.97830 -4.00493 3.34792 3.38968 3.41488 3.70385 4.43118 4.51031 4.69671 4.76939 5.00572 5.16363 5.37948 5.49656 5.52747 5.60507 5.64994 5.85671 6.00185 6.04169 6.17082 6.24232 6.30734 6.36996 6.39323 6.56824 7.01283 7.54099 7.75577 7.85725 7.99695 8.11216 8.45870 9.06590 9.63144 11.13628 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.084061 B = 0.006144 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.011556 B = 4556.554061 C = 4698.124112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.683 5.683 12 C 0.075 3.925 13 H 0.047 0.953 14 C -0.083 4.083 15 C -0.165 4.165 16 H 0.107 0.893 17 C -0.159 4.159 18 C -0.167 4.167 19 H 0.107 0.893 20 C -0.098 4.098 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.057 0.943 25 H 0.014 0.986 26 H 0.337 0.663 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -14.735 0.085 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.314 5.314 12 C -0.035 4.035 13 H 0.065 0.935 14 C -0.121 4.121 15 C -0.183 4.183 16 H 0.125 0.875 17 C -0.196 4.196 18 C -0.185 4.185 19 H 0.125 0.875 20 C -0.136 4.136 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.155 0.845 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.905 -14.598 -0.599 15.411 hybrid contribution 0.803 0.915 0.900 1.514 sum 5.707 -13.683 0.301 14.828 Atomic orbital electron populations 1.69960 1.06036 1.26695 1.50608 1.24997 0.94838 0.99191 0.95292 0.86647 0.79565 0.83115 0.78589 1.20215 1.21251 1.20309 1.21148 0.92941 0.91067 1.50966 0.92847 1.19068 0.94029 0.90445 0.97685 1.22199 0.96934 0.88538 0.98523 1.60608 1.19430 1.01863 1.49515 1.22504 0.94727 0.90618 0.95691 0.93481 1.21918 1.01084 0.91852 0.97275 1.23175 1.04695 0.97963 0.92475 0.87512 1.22913 0.92433 1.02684 1.01571 1.23035 0.94373 0.99206 1.01922 0.87515 1.22102 0.99655 0.92514 0.99347 0.92938 0.95646 0.96846 0.92403 0.96759 0.84527 0.89917 0.91934 0.89051 0.88681 0.91911 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.44 5.49 -3.82 -0.02 1.42 16 11 N -0.68 -12.53 6.40 -104.62 -0.67 -13.20 16 12 C 0.08 1.14 2.75 -65.72 -0.18 0.96 16 13 H 0.05 0.75 7.07 -51.93 -0.37 0.38 16 14 C -0.08 -1.19 6.45 -25.07 -0.16 -1.35 16 15 C -0.16 -1.95 7.06 -89.50 -0.63 -2.58 16 16 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.16 -1.73 9.83 -26.73 -0.26 -1.99 16 18 C -0.17 -1.90 7.06 -89.50 -0.63 -2.53 16 19 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 20 C -0.10 -1.26 6.15 -25.07 -0.15 -1.41 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.01 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.34 5.93 8.43 -39.29 -0.33 5.60 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.05 7.21 -51.93 -0.37 0.68 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 263.39 15.07 3.97 3.97 Total: -1.00 -29.90 263.39 -8.85 -38.75 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.26 Total: 0.90 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.60 Total: -20.77 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.07 Total: -39.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.90 -8.85 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397750188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.133 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds